Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 114175 |
| Name | oriT_BL661|unnamed3  |
| Organism | Salmonella enterica subsp. enterica serovar 1412:i:- strain BL661 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP126182 (1452..1629 [+], 178 nt) |
| oriT length | 178 nt |
| IRs (inverted repeats) | 104..109, 123..128 (ACAATC..GATTGT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 178 nt
>oriT_BL661|unnamed3
GATGTAACTCCATGCGCGATGAAAAATCGCATTTTAGCGCGTCACTGGTAGTTTAAAAACTGAGCTGGCATAATGCACGGCAAATCACGAAGTGCGCACTTATACAATCTCCACTCCGTTTCGATTGTGTGCGCCCTGCGGGGCTGAAAGAAAACCACAAAAAGGCATTACGGCAGAA
GATGTAACTCCATGCGCGATGAAAAATCGCATTTTAGCGCGTCACTGGTAGTTTAAAAACTGAGCTGGCATAATGCACGGCAAATCACGAAGTGCGCACTTATACAATCTCCACTCCGTTTCGATTGTGTGCGCCCTGCGGGGCTGAAAGAAAACCACAAAAAGGCATTACGGCAGAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 9101 | GenBank | WP_124770306 |
| Name | mobQ_PGC29_RS25080_BL661|unnamed3 |
UniProt ID | _ |
| Length | 715 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 715 a.a. Molecular weight: 81172.53 Da Isoelectric Point: 8.4480
>WP_124770306.1 MULTISPECIES: MobQ family relaxase [Enterobacteriaceae]
MAIYHLSMKIISRNSGYSAVASAAYRSGSLMLDERTGLTHDYTRKSGVAEAVILTPATAPAWCTNRAELW
NAVEKAERRKNSQLAREIELAIPHELPQDAARETVLAFVRENFVSQGMIADVAFHHMDKTNPHAHIMLTT
RAVGPAGFGGKVRDWNDRTHAETWRASWADHANRALANAGYQEEIDHRSYERQGLEKTPGIHLGKSACAM
ETRGIETERGEQNRLINRLNLEIQISRTELRNGGLTEPARRVADLLNIGLPDNATSYTLRDIIEALPKDS
NSAWKLTSNAMSMMADMQATRRRWEELNTERKEAMSHAASLKKSSPFSSGFSRIPLMQWAAPEYRSEQGK
IQSLSQQMEKLRQHYRKVEKQDIPASQMAFEKQWQQWGESGLAALRAQLLKREEELRRKEQEDTERSRAE
QLRKNDNAVMDSGVLSAVVTGYGEAPMPGNGEMTCYLLLHNRNGEYTLWGNELEKYRTRIFERVDLMRDR
SGYICDRSEIGQRPPLQRVYSSATFEQLLTQVCQTWPQHTRNLRQPKTWPESFCLGEDRQPAMPSLAARK
VDFTQGRLPPTLMPVMSSVDRETRQLQLLLVMGVDDSLGGVVRLNGTLYPAFAVPSADNSQLVISALTDK
GLRYAGYGVAVNHDADSHISPAPELMQFHLKTREAPLFAAVNTPEKQPDHLFRSLGFNRTWDEWRREEDA
RTHATVRRHDRGWSQ
MAIYHLSMKIISRNSGYSAVASAAYRSGSLMLDERTGLTHDYTRKSGVAEAVILTPATAPAWCTNRAELW
NAVEKAERRKNSQLAREIELAIPHELPQDAARETVLAFVRENFVSQGMIADVAFHHMDKTNPHAHIMLTT
RAVGPAGFGGKVRDWNDRTHAETWRASWADHANRALANAGYQEEIDHRSYERQGLEKTPGIHLGKSACAM
ETRGIETERGEQNRLINRLNLEIQISRTELRNGGLTEPARRVADLLNIGLPDNATSYTLRDIIEALPKDS
NSAWKLTSNAMSMMADMQATRRRWEELNTERKEAMSHAASLKKSSPFSSGFSRIPLMQWAAPEYRSEQGK
IQSLSQQMEKLRQHYRKVEKQDIPASQMAFEKQWQQWGESGLAALRAQLLKREEELRRKEQEDTERSRAE
QLRKNDNAVMDSGVLSAVVTGYGEAPMPGNGEMTCYLLLHNRNGEYTLWGNELEKYRTRIFERVDLMRDR
SGYICDRSEIGQRPPLQRVYSSATFEQLLTQVCQTWPQHTRNLRQPKTWPESFCLGEDRQPAMPSLAARK
VDFTQGRLPPTLMPVMSSVDRETRQLQLLLVMGVDDSLGGVVRLNGTLYPAFAVPSADNSQLVISALTDK
GLRYAGYGVAVNHDADSHISPAPELMQFHLKTREAPLFAAVNTPEKQPDHLFRSLGFNRTWDEWRREEDA
RTHATVRRHDRGWSQ
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 14610 | GenBank | NZ_CP126182 |
| Plasmid name | BL661|unnamed3 | Incompatibility group | Col8282 |
| Plasmid size | 4066 bp | Coordinate of oriT [Strand] | 1452..1629 [+] |
| Host baterium | Salmonella enterica subsp. enterica serovar 1412:i:- strain BL661 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |