Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 114159 |
| Name | oriT_FDAARGOS_252|unnamed6  |
| Organism | Paracoccus yeei strain FDAARGOS_252 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP020446 (24419..24449 [-], 31 nt) |
| oriT length | 31 nt |
| IRs (inverted repeats) | 3..10, 13..20 (ACATTGCT..AGCAATGT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 31 nt
>oriT_FDAARGOS_252|unnamed6
GCACATTGCTTTAGCAATGTATAAGCGCGCA
GCACATTGCTTTAGCAATGTATAAGCGCGCA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 9093 | GenBank | WP_105291693 |
| Name | mobQ_A6J80_RS22650_FDAARGOS_252|unnamed6 |
UniProt ID | _ |
| Length | 388 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 388 a.a. Molecular weight: 44194.57 Da Isoelectric Point: 10.9050
>WP_105291693.1 MobQ family relaxase [Paracoccus yeei]
MAIYHLSAKVIGRKGGRSSVAAAAYRAGGRLRDERQGIEHDYSRKGGVMHAEILAPENAPDWMRDRDRLW
NAVEAVERRKDAQLAREIEVALPRELDRGERLELLRGFVQRQFVDRGMIADLAVHEGRARDGHGQPHAHV
MLTLRELTGDGFGKKDRSWNEPELLMGWREAWARDANAALERAGRSERIDHRSLPVQRAEAERQATRARD
AGQEERARQLEIKVVELSREPEPKIGPAANALEKRGIETERGNAFRAAQARNAERRELGWRQLELRFELA
ERGRAFVAAARERVGQLWQRAEAAMGKIKERVMGQMERSDRSADREARRAAVLGRGGAEVQRQDRDIGRE
RPAPVELDHGRRDAILGRHKNDGQERQSGPGRDRERER
MAIYHLSAKVIGRKGGRSSVAAAAYRAGGRLRDERQGIEHDYSRKGGVMHAEILAPENAPDWMRDRDRLW
NAVEAVERRKDAQLAREIEVALPRELDRGERLELLRGFVQRQFVDRGMIADLAVHEGRARDGHGQPHAHV
MLTLRELTGDGFGKKDRSWNEPELLMGWREAWARDANAALERAGRSERIDHRSLPVQRAEAERQATRARD
AGQEERARQLEIKVVELSREPEPKIGPAANALEKRGIETERGNAFRAAQARNAERRELGWRQLELRFELA
ERGRAFVAAARERVGQLWQRAEAAMGKIKERVMGQMERSDRSADREARRAAVLGRGGAEVQRQDRDIGRE
RPAPVELDHGRRDAILGRHKNDGQERQSGPGRDRERER
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 10539 | GenBank | WP_146113123 |
| Name | t4cp2_A6J80_RS22640_FDAARGOS_252|unnamed6 |
UniProt ID | _ |
| Length | 614 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 614 a.a. Molecular weight: 68000.49 Da Isoelectric Point: 9.3128
>WP_146113123.1 type IV secretory system conjugative DNA transfer family protein [Paracoccus yeei]
MNLVLEPRHWILMIGAVLIAALAFWGLPQMLSIYPLTLYAIPLLAGAAILDTLGNASEGRRAPWKVAAWI
ALAGAALPALWPLQNALGAFSDTYRSWAAAGVPLPRSVWETFKGFGRFPEDHQQAVLIGGGVGLVVIALA
VITPLRAAFDPRFRRNRQSRSGPWRAGWMEPRDIARLARNKTGMPLALYGGKLLRYAKDDDKGWRGGHHL
VVSGTRGGKGVSAVIPAILDHQGPVVVLDIKGENFAVTRRHRQSLGRQVVVLNPFGIIEDSADQFNPLDY
IRAHELSRDIPLLADGLVRPEKGDGAHFAEMARELVAGAIEVVVTQEEPEHRTLVRVADLLLAPDLDDTL
QAWAENADLVGHRPAQIAATILRAGDRERGSIQTSIAKAFAWMQSDAMRHFLKRSSFRMEDLLDDRIDLF
IAVPLDQIDKQAVFMRLFINLVLGLAVRQDGRRKVKAPILLALDEFVRMGRMEQIMNIANVAAGVGFEAL
FVTQDTGQVVEAYGQNDARSIFGSCITKCLFNLNDIETAEWAARHLGEGTIYSQQIKEDRSLTSRGDLSY
AEQRQKLMTAEQIMGMKADELLLLVGNRNPLKAKQNIYFKNKTYQGKWDQNPLN
MNLVLEPRHWILMIGAVLIAALAFWGLPQMLSIYPLTLYAIPLLAGAAILDTLGNASEGRRAPWKVAAWI
ALAGAALPALWPLQNALGAFSDTYRSWAAAGVPLPRSVWETFKGFGRFPEDHQQAVLIGGGVGLVVIALA
VITPLRAAFDPRFRRNRQSRSGPWRAGWMEPRDIARLARNKTGMPLALYGGKLLRYAKDDDKGWRGGHHL
VVSGTRGGKGVSAVIPAILDHQGPVVVLDIKGENFAVTRRHRQSLGRQVVVLNPFGIIEDSADQFNPLDY
IRAHELSRDIPLLADGLVRPEKGDGAHFAEMARELVAGAIEVVVTQEEPEHRTLVRVADLLLAPDLDDTL
QAWAENADLVGHRPAQIAATILRAGDRERGSIQTSIAKAFAWMQSDAMRHFLKRSSFRMEDLLDDRIDLF
IAVPLDQIDKQAVFMRLFINLVLGLAVRQDGRRKVKAPILLALDEFVRMGRMEQIMNIANVAAGVGFEAL
FVTQDTGQVVEAYGQNDARSIFGSCITKCLFNLNDIETAEWAARHLGEGTIYSQQIKEDRSLTSRGDLSY
AEQRQKLMTAEQIMGMKADELLLLVGNRNPLKAKQNIYFKNKTYQGKWDQNPLN
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 14594 | GenBank | NZ_CP020446 |
| Plasmid name | FDAARGOS_252|unnamed6 | Incompatibility group | - |
| Plasmid size | 42744 bp | Coordinate of oriT [Strand] | 24419..24449 [-] |
| Host baterium | Paracoccus yeei strain FDAARGOS_252 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | cutO |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |