Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 114133 |
| Name | oriT_SCSIO 75233|p8  |
| Organism | Paracoccus sp. SCSIO 75233 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP115766 (18591..18610 [+], 20 nt) |
| oriT length | 20 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 20 nt
>oriT_SCSIO 75233|p8
GTTTGCATAAGTGCGCCCTT
GTTTGCATAAGTGCGCCCTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 9079 | GenBank | WP_271110021 |
| Name | mobQ_PAF12_RS18825_SCSIO 75233|p8 |
UniProt ID | _ |
| Length | 427 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 427 a.a. Molecular weight: 48247.26 Da Isoelectric Point: 6.4625
>WP_271110021.1 MobQ family relaxase [Paracoccus sp. SCSIO 75233]
MASYHLSVKTIKRSAGRSATAAAAYRVGERIECQREGRVHDYTRKQGIEETFILTPKDAPDWATDRSRLW
NEVEASETRRNSVTAREWELALPSEISAEARSQITRDFAQELVSRYGVAVDVAIHAPHREGDQRNHHAHV
LTSTRKLESDGFTAKTRVLDSAKTGGVEIEQMRGLWAELQNRALERAGEVERVDHRSLEAQREAALERGD
QLSAEELDRDPELKLGPAANSMERRAKAVAERQGREYVPVTERGAVVHAARQARAAFREMRARLELARET
YGIEREAGQGHVSAGLAALRAAATKDRDRNPEDFRERLARVVGRSPDQDDTPKSEGRNYARERLKEIMEK
DAGRDGQAAVHKLDGHSESELAGDTGREDRKPSVNERLKDVLNKPRERLEVEDERDQEKNQEVEKDRDID
RDPGLSH
MASYHLSVKTIKRSAGRSATAAAAYRVGERIECQREGRVHDYTRKQGIEETFILTPKDAPDWATDRSRLW
NEVEASETRRNSVTAREWELALPSEISAEARSQITRDFAQELVSRYGVAVDVAIHAPHREGDQRNHHAHV
LTSTRKLESDGFTAKTRVLDSAKTGGVEIEQMRGLWAELQNRALERAGEVERVDHRSLEAQREAALERGD
QLSAEELDRDPELKLGPAANSMERRAKAVAERQGREYVPVTERGAVVHAARQARAAFREMRARLELARET
YGIEREAGQGHVSAGLAALRAAATKDRDRNPEDFRERLARVVGRSPDQDDTPKSEGRNYARERLKEIMEK
DAGRDGQAAVHKLDGHSESELAGDTGREDRKPSVNERLKDVLNKPRERLEVEDERDQEKNQEVEKDRDID
RDPGLSH
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 10518 | GenBank | WP_271110024 |
| Name | t4cp2_PAF12_RS18835_SCSIO 75233|p8 |
UniProt ID | _ |
| Length | 558 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 558 a.a. Molecular weight: 61516.47 Da Isoelectric Point: 6.8879
>WP_271110024.1 type IV secretory system conjugative DNA transfer family protein [Paracoccus sp. SCSIO 75233]
MRSVMLVFGGLFRFFGRLIFTPILLGWMIGAVLFGAMLGSLVATPFIFAFFDQTPGESAWQWLVFGPFMF
IGAVFGFQYWRMASGADAYFGLTGDSHGSARFANRKELKKLQREDGLLIGRNPHTGRLLHYDGPAHLITL
APTRAGKGVGTVIPNLLAAERSVLVIDPKGENARIAGKARRRFGTVHVLDPFEVSGHPSAAYNPLDRLTP
DSLDLGEDAASLTEALVMDPPGQVTEAHWNEEAKAILGGLIMFCVCHEDRDRRSLATVREYLTLPPEKLR
ALLELMQESDEAGGLIARAANRFLGKADREAASVLSNAQRHTHFLDSPRIAKCLARSDFAFSDLRHRITS
VFLVLPPNRMDAYSRWLRLLVSQALQDIARDAERSQSASEEGRSVRLKASNPTLGPALFLLDEFAALGRL
EAVERAMGLMAGYGLQLWPILQDMSQLKDLYGDRAGTFIANAGVQQVFGVNDFETAKWLSQMIGQETAGF
QTDSFKPGDGPSFSNNLTGRDLLTPDEIMQLPPDRQLLRVQGQATAIAQKLRYYADPEFAGLFTPEAR
MRSVMLVFGGLFRFFGRLIFTPILLGWMIGAVLFGAMLGSLVATPFIFAFFDQTPGESAWQWLVFGPFMF
IGAVFGFQYWRMASGADAYFGLTGDSHGSARFANRKELKKLQREDGLLIGRNPHTGRLLHYDGPAHLITL
APTRAGKGVGTVIPNLLAAERSVLVIDPKGENARIAGKARRRFGTVHVLDPFEVSGHPSAAYNPLDRLTP
DSLDLGEDAASLTEALVMDPPGQVTEAHWNEEAKAILGGLIMFCVCHEDRDRRSLATVREYLTLPPEKLR
ALLELMQESDEAGGLIARAANRFLGKADREAASVLSNAQRHTHFLDSPRIAKCLARSDFAFSDLRHRITS
VFLVLPPNRMDAYSRWLRLLVSQALQDIARDAERSQSASEEGRSVRLKASNPTLGPALFLLDEFAALGRL
EAVERAMGLMAGYGLQLWPILQDMSQLKDLYGDRAGTFIANAGVQQVFGVNDFETAKWLSQMIGQETAGF
QTDSFKPGDGPSFSNNLTGRDLLTPDEIMQLPPDRQLLRVQGQATAIAQKLRYYADPEFAGLFTPEAR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 14568 | GenBank | NZ_CP115766 |
| Plasmid name | SCSIO 75233|p8 | Incompatibility group | - |
| Plasmid size | 21341 bp | Coordinate of oriT [Strand] | 18591..18610 [+] |
| Host baterium | Paracoccus sp. SCSIO 75233 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |