Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 114132 |
| Name | oriT_SCSIO 75233|p7  |
| Organism | Paracoccus sp. SCSIO 75233 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP115765 (21519..21550 [+], 32 nt) |
| oriT length | 32 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 32 nt
>oriT_SCSIO 75233|p7
GCACGTTGTCGAAGACAATGTATAAGCGCGCA
GCACGTTGTCGAAGACAATGTATAAGCGCGCA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 9078 | GenBank | WP_271110001 |
| Name | mobQ_PAF12_RS18715_SCSIO 75233|p7 |
UniProt ID | _ |
| Length | 427 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 427 a.a. Molecular weight: 48359.87 Da Isoelectric Point: 7.6174
>WP_271110001.1 MobQ family relaxase [Paracoccus sp. SCSIO 75233]
MAIYHLSAKVISRAGGRSSVAAAAYRTAGRLRDDRQGVEHDYSRKGGVVYSEIMAPENAPDWMRDRDQLW
NAVEAVEKRRDAQLAREIEVALPRELNRGERLELLRGFVQREFVDRGMIADVAVHEGKARDGHGQPHAHV
MLTMRELTGEGFGKKDRSWNAPDLLMGWREAWARDANTALERAGRSERIDHRSLDVQRAEAEQQVERARG
GGQEELAIEHEKKVVELSREPEPKIGPSANAQEKRGIVTERGEAFRAAQARNAQRQELGWRQLELRLELM
ERGRAFIATARERLDQLWGRAEAAMSRIKERVMGEVERPQAGAERGDMDARRAAVLGREVDRPEVQAPDV
GRERAPSDDPIRERLNAILGRARDIGQERDAAAVERDIATRDGEGRDQGRRDDILGRGRDTASERGQGRD
RDRDRER
MAIYHLSAKVISRAGGRSSVAAAAYRTAGRLRDDRQGVEHDYSRKGGVVYSEIMAPENAPDWMRDRDQLW
NAVEAVEKRRDAQLAREIEVALPRELNRGERLELLRGFVQREFVDRGMIADVAVHEGKARDGHGQPHAHV
MLTMRELTGEGFGKKDRSWNAPDLLMGWREAWARDANTALERAGRSERIDHRSLDVQRAEAEQQVERARG
GGQEELAIEHEKKVVELSREPEPKIGPSANAQEKRGIVTERGEAFRAAQARNAQRQELGWRQLELRLELM
ERGRAFIATARERLDQLWGRAEAAMSRIKERVMGEVERPQAGAERGDMDARRAAVLGREVDRPEVQAPDV
GRERAPSDDPIRERLNAILGRARDIGQERDAAAVERDIATRDGEGRDQGRRDDILGRGRDTASERGQGRD
RDRDRER
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 10517 | GenBank | WP_271110002 |
| Name | t4cp2_PAF12_RS18725_SCSIO 75233|p7 |
UniProt ID | _ |
| Length | 596 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 596 a.a. Molecular weight: 65562.63 Da Isoelectric Point: 9.8043
>WP_271110002.1 type IV secretory system conjugative DNA transfer family protein [Paracoccus sp. SCSIO 75233]
MAAAALILAPQAVAIYPVTTYAFPIIALATILDTLGTAAERHRTPLKLLAWVCLCSAALTALTPLRAPLN
DILATVQAWTGAGWPLPRAIWEGLKGLARYSDPQKQAMAISFALGVVGVAVAVSAPLVAIFNPRIGRNRK
SRTGPWQAGWMDPRDITQLARNKTGLPLALHKGKLLRYVKNDAKGWRGGHHLVVSGTRGGKGVSAVIPAI
LDHQGPVVALDIKGENFAVTRRHREELGRKVAVLNPFGLVEDGKDQFNPLDYIRPHELARDVALVADGLV
KPEQGDGAHFCEMARQLVAAAIEVILTQEEHDKRNLISVADLLLSANFDQTLEVWSKSKDLIGHRPAQTA
ATILRAGDKERGAIQTTVSKAFEWMQSDNMRHFLAGSSFRMDDLLDDRVDLFIAVPLDQVDKQAIFMRLF
INLVLGTVVRQDGRRKVNAPILLVLDEFVRMGRMEQIMNIANVAAGAGVEALFVTQDTGQVEKAYGPNDA
RSIFGSCITKRVFNLNDIETAEWAARHLGESTVYSQQIREGKALNEGRDFSYSEQRQKLMTAEQITGMKA
DDLLLLVGNRNPLKAKQNVYFKSKTYRGRFDQNPLN
MAAAALILAPQAVAIYPVTTYAFPIIALATILDTLGTAAERHRTPLKLLAWVCLCSAALTALTPLRAPLN
DILATVQAWTGAGWPLPRAIWEGLKGLARYSDPQKQAMAISFALGVVGVAVAVSAPLVAIFNPRIGRNRK
SRTGPWQAGWMDPRDITQLARNKTGLPLALHKGKLLRYVKNDAKGWRGGHHLVVSGTRGGKGVSAVIPAI
LDHQGPVVALDIKGENFAVTRRHREELGRKVAVLNPFGLVEDGKDQFNPLDYIRPHELARDVALVADGLV
KPEQGDGAHFCEMARQLVAAAIEVILTQEEHDKRNLISVADLLLSANFDQTLEVWSKSKDLIGHRPAQTA
ATILRAGDKERGAIQTTVSKAFEWMQSDNMRHFLAGSSFRMDDLLDDRVDLFIAVPLDQVDKQAIFMRLF
INLVLGTVVRQDGRRKVNAPILLVLDEFVRMGRMEQIMNIANVAAGAGVEALFVTQDTGQVEKAYGPNDA
RSIFGSCITKRVFNLNDIETAEWAARHLGESTVYSQQIREGKALNEGRDFSYSEQRQKLMTAEQITGMKA
DDLLLLVGNRNPLKAKQNVYFKSKTYRGRFDQNPLN
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 14567 | GenBank | NZ_CP115765 |
| Plasmid name | SCSIO 75233|p7 | Incompatibility group | - |
| Plasmid size | 23901 bp | Coordinate of oriT [Strand] | 21519..21550 [+] |
| Host baterium | Paracoccus sp. SCSIO 75233 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |