Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   114127
Name   oriT_STAA11|unnamed2 in_silico
Organism   Vagococcus intermedius strain STAA11
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP110234 (5298..5434 [-], 137 nt)
oriT length   137 nt
IRs (inverted repeats)      21..28, 42..49  (AAAAGGGG..CCCCTTTT)
 25..30, 39..44  (GGGGAA..TTCCCC)
Location of nic site      104..105
Conserved sequence flanking the
  nic site    		  GCTTGCAGTA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 137 nt

>oriT_STAA11|unnamed2
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGCTTTATATGGTCTATTTTGTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   9075 GenBank   WP_112251621
Name   Relaxase_OL234_RS10815_STAA11|unnamed2 insolico UniProt ID   _
Length   410 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 410 a.a.        Molecular weight: 47746.30 Da        Isoelectric Point: 8.1264

>WP_112251621.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Lactobacillales]
MATIAKISNGASAASALNYALGQDRPMHEKTEQWLQDHQLERPVELTNCRAVAVGGTNGIDPFIAKEQFD
VVRQLHNQTKESNQVLRITQSFALDELNPKVQKDWQKANDLGVELAENLYPNHQSAVYTHLDGKNHVLHN
HIIVNKVNLETGKKLREQKGESVQRAREMNDRLASRENWHILEPPKERQTETEKELIAKNEYSYMDDLRE
RINKSLQDVSVSSYETFKERLSDNGVILSERGQTFSYAFLDANNKQRRARETRLGSDFGRETILHELENR
ARQNEFRAVEQREPAITPLERDTQQRESEIVSLEQAIEPRKSEALKRESTTNRFIDTIKQFAGRVPELTQ
RVTRKLKQTKEKILEDFERRFSKDMKNYEQEQQKSLEKQANRDVQSEKKPTKDHDRGMSR

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(9-280)


  Protein structure



No available structure.




Host bacterium

ID   14562 GenBank   NZ_CP110234
Plasmid name   STAA11|unnamed2 Incompatibility group   -
Plasmid size   11469 bp Coordinate of oriT [Strand]   5298..5434 [-]
Host baterium   Vagococcus intermedius strain STAA11

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -