Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   114101
Name   oriT_pR17.0809_4.7k in_silico
Organism   Salmonella enterica subsp. enterica serovar Anatum strain R17.0809
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP100680 (2075..2249 [+], 175 nt)
oriT length   175 nt
IRs (inverted repeats)      101..106, 120..125  (ACAATC..GATTGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 175 nt

>oriT_pR17.0809_4.7k
GTGACTCCTTGCGCGGTGAAAAATCGCATTTTAGCTCGTCACTGGTAGTTTAAAAACTGAGCTGGCATAATGCACGGCACATCACGAAGTGCGCACTTATACAATCTTCACTTCGTTTCGATTGTGTGCGCCCTGCGGGGCTGAAAGAAAACGGCAAAAAGGCATTACGGAAGAA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   9052 GenBank   WP_052995415
Name   mobQ_NL708_RS23400_pR17.0809_4.7k insolico UniProt ID   A0A722FL13
Length   739 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 739 a.a.        Molecular weight: 84457.69 Da        Isoelectric Point: 8.3340

>WP_052995415.1 MULTISPECIES: MobQ family relaxase [Enterobacteriaceae]
MAIYHLSMKIISRKNGYSAVASAAYRSGSVIPDDRTGLIHDYTRKRGVDDAVILTPANAPSWCGDRSVLW
NAVEKAEQRRNSQLAREIELAIPREISREAAREAVLAFVRENFVSRGMIADVAFHHMDRTNPHAHIMLTT
RAVGETGFAGKVRDWNDRALAETWRASWADHANRALANAGYQEEIDHRSYERQGLEKAPGLHLGKAACAM
EKRGMETERGEQNRLINSLNLEIQVSRTRLAVIQVQENVRKRELSDAARRAAEALNLTIPAANASADTLR
EFIATLPQECGNAWEMTPEFVAMNGKANDIKREGNALVKERDILEKEMTGLRKARPVASILSELPLMTWA
EPEYRKRQLRFWKLEKQIESLLRTYRAVKERDIPARRQAFETQWNTWISPGMAELKEKLSAREAERRREE
AEAEARRKEQEYDARLKHHDNHRLSRETALAGVITELGRAREPGTGRITRYMMLSNRAGEFTVWGDELAH
YPQSVHDPVNVYLSPGGAVMVSDIREGMPESHETMARPERVRMYSGATVRHVLEQMRQGWPSYGFPALPH
HWPDNFYFSDDRRPAASPLPSAHRVDVTAYAAPEQLMPVVFSTERNSRTLNLLLCKGPEEMLVGFVRLED
ELRPVLALPSPDYSHLMVSIITENGIHLAGYGEAINRDADTPYPPEPKLMQFRLKGCQDTLFAAINKPEE
MPDYLFRQLGFNQTWHEWKRDEQHRQQQRRPGHYRGMSM

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(18-213)


  Protein structure


Source ID Structure
AlphaFold DB A0A722FL13


Host bacterium

ID   14536 GenBank   NZ_CP100680
Plasmid name   pR17.0809_4.7k Incompatibility group   Col156
Plasmid size   4697 bp Coordinate of oriT [Strand]   2075..2249 [+]
Host baterium   Salmonella enterica subsp. enterica serovar Anatum strain R17.0809

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -