Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   114077
Name   oriT_pR17.4849_3.0k in_silico
Organism   Salmonella enterica subsp. enterica serovar Montevideo strain R17.4849
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP100750 (1833..1870 [+], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      7..14, 18..25  (GACTTTGC..GCAAAGTC)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 38 nt

>oriT_pR17.4849_3.0k
GGGCACGACTTTGCGAAGCAAAGTCTAGTGAGTACACT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   9042 GenBank   WP_061341651
Name   mobV_NL707_RS23145_pR17.4849_3.0k insolico UniProt ID   A0A5T4PDP7
Length   324 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 324 a.a.        Molecular weight: 35777.43 Da        Isoelectric Point: 10.3810

>WP_061341651.1 MULTISPECIES: MobV family relaxase [Enterobacteriaceae]
MAAYAIMRCKKLSGMGSVAAALQHCYRERETPNADAERTPDNEHRAATSTDAAMGRLRELLPEKRRKDAV
LAVEYVMTASPEWWAKATPQQQAAFFDQAQGWLAAKYGADRIVTASIHRDEATPHLSAFVVPLTQDGRLS
AKEFIGGRDKMRADQTSFAEVVRDLGLERGIEGSRATHQRVQSYYGAIERQPGHATITPQAIEPRVLRKG
IFSKDVETPEAVAARVTAAVREGYGPTVAAAAGARQEREKARQAQETARSLRDRLKPVLDALGPLNRDMQ
AKAAQIIKAVGEKLLAEQREATRQRQAQRLRSRGRDRDDGGLSR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-185)


  Protein structure


Source ID Structure
AlphaFold DB A0A5T4PDP7


Host bacterium

ID   14512 GenBank   NZ_CP100750
Plasmid name   pR17.4849_3.0k Incompatibility group   -
Plasmid size   2965 bp Coordinate of oriT [Strand]   1833..1870 [+]
Host baterium   Salmonella enterica subsp. enterica serovar Montevideo strain R17.4849

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -