Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   114044
Name   oriT_6.4-Qnr in_silico
Organism   Aeromonas dhakensis isolate TN5
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_LR963121 (660..695 [-], 36 nt)
oriT length   36 nt
IRs (inverted repeats)      3..9, 13..19  (GTTTCTC..GAGAAAC)
Location of nic site      30..31
Conserved sequence flanking the
  nic site    		  GTGCGCCCTC
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 36 nt

>oriT_6.4-Qnr
CAGTTTCTCGCAGAGAAACCGGTAAGTGCGCCCTCC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   9023 GenBank   WP_172688246
Name   MobA_MobL_NMK69_RS22435_6.4-Qnr insolico UniProt ID   _
Length   705 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 705 a.a.        Molecular weight: 77910.75 Da        Isoelectric Point: 7.1945

>WP_172688246.1 MULTISPECIES: DNA-primase RepB domain-containing protein [Gammaproteobacteria]
MAIFHLAAKTGSRGGGQSAKAKADYIQREGKYARDKDEVLHTQSGNMPSWAAGAAEVGNYWDAADLYERA
NGRLFKEVEFALPIELTLDQQRVLVDDFAKYLTEVERLPYTLAIHKGGGENPHCHLMMSERKNDGVERKK
DQWFSRYNPKNPGQGGAQKTESLKPKAWLEKTRAAWADHANRALEMAGHEARIDHRTLEAQGIERLPTIH
LGPNVVEMEGRGIRTGRADTALSIETANTEIIDLQAYRESIDHERDRQSEAGQRDRRAGGADRAAGAELG
DSRRQGRDGDRGDSKCQHKAGWRVGDPAGQSRDGVGRHSQGHEGRSRGTGQGSREGRGRSESVGMEDFRS
HLDGFSAVYASAADRIVALADPGTQDDKGGGNVATTQAQVKGDRTSQAIARQLKAMGCDLYDIGIRDSAT
GKMMNREWTLQEVVENAAWLKRMNAQGNDIYIRPAESARHGLVLVDDLSSFDLDAMKEEGREPAAVIETS
PKNYQAWVKVAANAPAEHRGAIARRLAREYDADPASADSHHYGRLAGFTNQKPKHTTKTGYQPWVLCRAS
SGQAATTGPQMVQEAGQELESKERQQEQARRLEGIETAQPRRYHRTALDEYRSEMAGLVKRFGDDLSKCD
YIAAMKLAMKGIDPDEIAKAMAEASPGLMDRKAGHEADYIERTIKKVMALPEVQKIRAELEQTQKTKGEY
PTLEM

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(21-220)

RepB DNA-primase from phage plasmid (RepB_primase)

(419-592)


  Protein structure



No available structure.




Host bacterium

ID   14479 GenBank   NZ_LR963121
Plasmid name   6.4-Qnr Incompatibility group   IncQ1
Plasmid size   6386 bp Coordinate of oriT [Strand]   660..695 [-]
Host baterium   Aeromonas dhakensis isolate TN5

Cargo genes

Drug resistance gene   qnrS2
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -