Detailed information of oriT
oriT
The information of the oriT region
oriTDB ID | 114031 |
Name | oriT_pCU11E |
Organism | Lactococcus lactis subsp. lactis strain UC11 |
Sequence Completeness | - |
NCBI accession of oriT (coordinates [strand]) | NZ_CP034572 (6614..6750 [+], 137 nt) |
oriT length | 137 nt |
IRs (inverted repeats) | 21..28, 42..49 (AAAAGGGG..CCCCTTTT) 25..30, 39..44 (GGGGAA..TTCCCC) |
Location of nic site | 104..105 |
Conserved sequence flanking the nic site |
GCTTGCAGTA |
Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 137 nt
>oriT_pCU11E
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGTTTTATATTTTCTATTTTGTT
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGTTTTATATTTTCTATTTTGTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure fileHost bacterium
ID | 14466 | GenBank | NZ_CP034572 |
Plasmid name | pCU11E | Incompatibility group | - |
Plasmid size | 7809 bp | Coordinate of oriT [Strand] | 6614..6750 [+] |
Host baterium | Lactococcus lactis subsp. lactis strain UC11 |
Cargo genes
Drug resistance gene | - |
Virulence gene | - |
Metal resistance gene | - |
Degradation gene | - |
Symbiosis gene | - |
Anti-CRISPR | - |