Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   114023
Name   oriT_FDAARGOS 1446|unnamed1 in_silico
Organism   Lelliottia amnigena strain FDAARGOS 1446
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP077332 (59224..59308 [+], 85 nt)
oriT length   85 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 85 nt

>oriT_FDAARGOS 1446|unnamed1
GGGTGTCGGGGCGGAGCACTGACCAGGTGGTGTTTGTAATATCGTGCGTGCGCGGTATTACAAACACACATCCTGTCCCGTCTTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   9010 GenBank   WP_216981929
Name   Relaxase_I6L76_RS22455_FDAARGOS 1446|unnamed1 insolico UniProt ID   _
Length   900 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 900 a.a.        Molecular weight: 102895.06 Da        Isoelectric Point: 8.5916

>WP_216981929.1 relaxase/mobilization nuclease domain-containing protein [Lelliottia amnigena]
MIPVIPKKRKDGKSSFGDLVSYVSVRDEPQDDDLMEVIRASGTKADMPHSSRFSRLVDYATKLRDESFIS
LVDVMPDGGEWVNFYGVTCFHNCSSIESAAEEMEFTARKAKFARSKSDPVFHFILSWQSHESPRPEQIYD
SVRHSLSRLGLSGHQFVSAVHTDTDNLHVHVAVNRVHPETGYLNWLSYSQEKLSKACRELELKHGFSPDN
GCYVLAQDNRIVRRTSVERDRQSAWLHGRKPSLKEYIADTAVAGLREAPVTDWPSLHQRFAKAGLFIASD
NGELKVKDGWDRKRPGVTLSAFGYSWSTDKLICKLGEFTPPAQDIFTQVPDVGRYDPDTVTMLSRPGRMT
ETETLNEYAVSRLRAPLIALYQDPAQRTMQAVHTLLAHSGLYLKEQHDCLVICDGYDQTRTPVRAERVWP
ALTKAVMNSYEGGWQPVPHDIFRQVPPAERFAGGGLKARPVSDREWAKLRTGSGPQGALKREIFSDKESL
WSYAVSHCRQDLEALISSGKFTWERGHELLARQGLLLMREKQGLVVMDAYNHDQTPVKASHVHPDLTLVR
AEPHAGAFVRVPSDIFERVAPVSRYNPELAVSDRDIPGMKRDPELRRQRREARAAARDDLKARYSAWRAN
WQRPDLHNRERWQAIHDECRMRKARIRAQQRDPLVRKLHYHIAELQRMQALIALKESVKAERLELIGQGK
WYPPSYRQWVEVEALKGDRAAISQLRGWDYRDRRHDNTQSTSNQRCVVLCEPGSAPLYYNMPGLKPALQK
NGSIRFSDTDTGQHVCTDYGDRVVFRNGSDFASLQRELNRVSPVLFARDPKMGFAPEGNDIQFNQALAEM
VGWYNVYRAGEEDQVRISRPDVDRMREQCEAFFRNAEAEQNTPAYISHEPRNDWKPPSPR

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(51-312)


  Protein structure



No available structure.




Auxiliary protein

ID   5252 GenBank   WP_269467670
Name   WP_269467670_FDAARGOS 1446|unnamed1 insolico UniProt ID   _
Length   61 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  Auxiliary protein sequence


Download         Length: 61 a.a.        Molecular weight: 7105.30 Da        Isoelectric Point: 10.3559

>WP_269467670.1 MULTISPECIES: hypothetical protein [Enterobacteriaceae]
MNRKVIPVIDNNFLTELLRLGRLQKHHFVEGKRIGDKEYSTVLVAITELANTLRKQLMNND

  Protein domains



No domain identified.



  Protein structure



No available structure.




Host bacterium

ID   14458 GenBank   NZ_CP077332
Plasmid name   FDAARGOS 1446|unnamed1 Incompatibility group   -
Plasmid size   157312 bp Coordinate of oriT [Strand]   59224..59308 [+]
Host baterium   Lelliottia amnigena strain FDAARGOS 1446

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   silS, silR, silC, silF, silB, silA, pcoC, pcoD, pcoR, pcoS, pcoE, arsC, silE
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -