Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 114009 |
| Name | oriT_FDAARGOS_754|unnamed  |
| Organism | Staphylococcus warneri strain FDAARGOS_754 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP054016 (33287..33406 [+], 120 nt) |
| oriT length | 120 nt |
| IRs (inverted repeats) | 52..58, 62..68 (TTGGGAT..ATCCCAA) 24..30, 35..41 (TTTTTGC..GCAAAAA) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 120 nt
>oriT_FDAARGOS_754|unnamed
AGTGGCTAGCAATAGCTACTCATTTTTTGCGTATGCAAAAACATAAAGGGCTTGGGATATAATCCCAACAAGCAGGCGACGCTACCACGTTAGTGGCTAGCAAAGCCATTGCTTGCCAAA
AGTGGCTAGCAATAGCTACTCATTTTTTGCGTATGCAAAAACATAAAGGGCTTGGGATATAATCCCAACAAGCAGGCGACGCTACCACGTTAGTGGCTAGCAAAGCCATTGCTTGCCAAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 9001 | GenBank | WP_037551830 |
| Name | Relaxase_FOC62_RS00160_FDAARGOS_754|unnamed |
UniProt ID | _ |
| Length | 335 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 335 a.a. Molecular weight: 38380.28 Da Isoelectric Point: 7.5329
>WP_037551830.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus warneri]
MATTKISATKSTSRAINYAEKRAEEKSGLNCDIDYAKSSFKASRELYGKTGGNEGHVIIQSFKPGEVTPE
QCNQLGLALAKKFATNHQVAVYTHCDTDHIHNHIVINAVNLETGKKFNNNKQALRDLRDFNDDVCREHGL
SVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAIDQSTATSMDEFKDHLSQYDIEIARVTPKSI
TYRHLAEDKKVRGRRLGEDYNKGGIEDGFERQIQRQQQGREDDKDIQPKRPTSNRDEPAQRDTGVTQSYW
DKFAQDTNDLERRRQAAESARLAHEKARRDREERERAKQASRTIINDDRDHGLEL
MATTKISATKSTSRAINYAEKRAEEKSGLNCDIDYAKSSFKASRELYGKTGGNEGHVIIQSFKPGEVTPE
QCNQLGLALAKKFATNHQVAVYTHCDTDHIHNHIVINAVNLETGKKFNNNKQALRDLRDFNDDVCREHGL
SVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAIDQSTATSMDEFKDHLSQYDIEIARVTPKSI
TYRHLAEDKKVRGRRLGEDYNKGGIEDGFERQIQRQQQGREDDKDIQPKRPTSNRDEPAQRDTGVTQSYW
DKFAQDTNDLERRRQAAESARLAHEKARRDREERERAKQASRTIINDDRDHGLEL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 14444 | GenBank | NZ_CP054016 |
| Plasmid name | FDAARGOS_754|unnamed | Incompatibility group | - |
| Plasmid size | 42569 bp | Coordinate of oriT [Strand] | 33287..33406 [+] |
| Host baterium | Staphylococcus warneri strain FDAARGOS_754 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | AcrIIA21 |