Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 113975 |
| Name | oriT_pAlvB  |
| Organism | Hafnia paralvei strain VBC_1714 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_JAEAGQ010000020 (3437..3496 [-], 60 nt) |
| oriT length | 60 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_pAlvB
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACATAGCGCTAGCGAAGTGTATACTGGCTTA
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACATAGCGCTAGCGAAGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 14410 | GenBank | NZ_JAEAGQ010000020 |
| Plasmid name | pAlvB | Incompatibility group | - |
| Plasmid size | 5343 bp | Coordinate of oriT [Strand] | 3437..3496 [-] |
| Host baterium | Hafnia paralvei strain VBC_1714 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |