Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 113944
• Name: oriT_TMDU-265|p3
• Organism: Staphylococcus epidermidis strain TMDU-265
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP093184 (3863..3983 [-], 121 nt)
• oriT length: 121 nt
• IRs (inverted repeats): 53..58, 64..69 (TTGGGG..CCCCAA) 24..30, 35..41 (TTTTTGC..GCAAAAA) 1..8, 14..21 (AGTGGCTA..TAGCCACT)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 121 nt

>oriT_TMDU-265|p3
AGTGGCTAGCAATTAGCCACTCTTTTTTGCGTAAGCAAAAATCATAAGGGGTTTGGGGATGTGCCCCAACAAGCTGGCGTCTCTACCACGTTAGTGGCTAGCAAAGCCAATGCTTGCCAAA

oriT secondary structure

Predicted by RNAfold.

Relaxase

Relaxase_MNU40_RS13420_TMDU-265|p3

• ID: 8958
• GenBank: WP_254106928
• Name: Relaxase_MNU40_RS13420_TMDU-265|p3
• UniProt ID: _
• Length: 336 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 336 a.a.
• Molecular weight: 38556.40 Da
• Isoelectric Point: 7.3202

>WP_254106928.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus epidermidis]
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQSFKPGEVTPE
QCNQLGLALAEKLAPNHQVAVYTHADTDHVHNHIVINSIDLETGKKFNNNKQALRNVRDFNDEVCLEHGL
SVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAIDQSQATNMDEFKDHLNQHGIEIERVTPKSI
TYRHLTEDKKVRGRKLGEDYNKGGIEDGFERQIQRRRQQERDSDTEFQPKRPTSNRDEATERDTGVTQSD
WDQFAQDTNELERRRQAAESARLAHEKARRDREERARAKQASRRIINNDRDHGLEL

Protein domains

Predicted by InterproScan.

• Relaxase/Mobilisation nuclease domain (Relaxase) (9-242)

Protein structure

No available structure.

Host bacterium

• ID: 14379
• GenBank: NZ_CP093184
• Plasmid name: TMDU-265|p3
• Incompatibility group: -
• Plasmid size: 7957 bp
• Coordinate of oriT [Strand]: 3863..3983 [-]
• Host baterium: Staphylococcus epidermidis strain TMDU-265

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -