Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 113943
• Name: oriT_TMDU-265|p2
• Organism: Staphylococcus epidermidis strain TMDU-265
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP093183 (2319..2439 [+], 121 nt)
• oriT length: 121 nt
• IRs (inverted repeats): 53..59, 63..69 (TTGGGGA..TCCCCAA) 23..30, 35..42 (ATTTTTTC..GAAAAAAT)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 121 nt

>oriT_TMDU-265|p2
AGTGGCTAACATGTTAGCCACTATTTTTTCGCTAGAAAAAATCATAAGGGGCTTGGGGAGTATCCCCAACAAGCTGGCGCGTCTGCCACGTTAGTGGCTAGCAAAGCCAATGCTTGCCAAA

oriT secondary structure

Predicted by RNAfold.

Relaxase

Relaxase_MNU40_RS13375_TMDU-265|p2

• ID: 8957
• GenBank: WP_254106924
• Name: Relaxase_MNU40_RS13375_TMDU-265|p2
• UniProt ID: _
• Length: 336 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 336 a.a.
• Molecular weight: 38541.38 Da
• Isoelectric Point: 7.5890

>WP_254106924.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus epidermidis]
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQSFKPGEVTPE
QCNQLGLALAEKLAPNHQVAVYTHADTDHVHNHIVINSIDLETGKKFNNNKQALRNVRDFNDEVCLEHGL
SVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAIDQSQATNMNEFKDHLNQHGIEIERVTPKSI
TYRHLAEDKKVRGRKLGEDYNKGGIEDGFERQIQRRRQQERDSDTEFQPKRPTSNRDESTERDTGVTQSD
WDQFAQDTNELERRRQAAESARLAHEKARRDREERARAKQASRRIINNDRDHGLEL

Protein domains

Predicted by InterproScan.

• Relaxase/Mobilisation nuclease domain (Relaxase) (9-242)

Protein structure

No available structure.

Host bacterium

• ID: 14378
• GenBank: NZ_CP093183
• Plasmid name: TMDU-265|p2
• Incompatibility group: -
• Plasmid size: 8870 bp
• Coordinate of oriT [Strand]: 2319..2439 [+]
• Host baterium: Staphylococcus epidermidis strain TMDU-265

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -