Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   113935
Name   oriT_TMDU-128|p1 in_silico
Organism   Staphylococcus epidermidis strain TMDU-128
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP093171 (267..364 [-], 98 nt)
oriT length   98 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 98 nt

>oriT_TMDU-128|p1
TCTGCTGAAACTTTAAATATGAGTGTGCCTAATTTCGTTAAGAAAAAGGCACAGGGTAGTCGATTAGTCGCACCTAAATTTGATAAAGCAACGCGACA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   8949 GenBank   WP_019236265
Name   Rep_trans_MNU35_RS12275_TMDU-128|p1 insolico UniProt ID   _
Length   311 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 311 a.a.        Molecular weight: 37196.30 Da        Isoelectric Point: 8.0051

>WP_019236265.1 MULTISPECIES: replication initiation factor domain-containing protein [Staphylococcus]
MTEENHSNHLQNKYSDSLSKTGYSNSRLSGQTLGKSQPELSFDAMTIVGNLNKTNAKKLSDFMSVEPQIR
LWDILQTKFKAKALQEKVYIEYDKVKADTWDRRNMRVEFNPNKLTSEEMLWLKQNIIDYMEDDGFTRLDL
AFDFEDDLSDYYAMTDKAVKKTVFYGRNGKPETKYFGVRDSDRFIRIYNKKQERKDNADVEVMSEHLWRV
EVELKRDMVDYWNDCFNDLHILKPAWTTLEKINEQAMVYTLLHEESMWGKLSKNTKTKFKKLIREISPID
LTELMKSTLKANEKQLQKQIDFWQREFRFWR

  Protein domains


Predicted by InterproScan.

Replication initiation factor (Rep_trans)

(135-282)


  Protein structure



No available structure.




Host bacterium

ID   14370 GenBank   NZ_CP093171
Plasmid name   TMDU-128|p1 Incompatibility group   -
Plasmid size   4671 bp Coordinate of oriT [Strand]   267..364 [-]
Host baterium   Staphylococcus epidermidis strain TMDU-128

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -