Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   113922
Name   oriT_p.BML2526 in_silico
Organism   Providencia rettgeri strain BML2526
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_LC507075 (203846..203950 [+], 105 nt)
oriT length   105 nt
IRs (inverted repeats)      56..61, 74..79  (TGGAAT..ATTCCA)
 46..51, 56..61  (ATTCCA..TGGAAT)
 1..6, 8..13  (AATTTG..CAAATT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 105 nt

>oriT_p.BML2526
AATTTGACAAATTCCAAGGATGGGTTAGCCTAGAGACAGAACTAGATTCCAGTAGTGGAATAATCAGCTTTAAATTCCAGATAGATAGTTATGTGGATAGGAATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


T4CP

ID   10378 GenBank   WP_301951439
Name   traD_pBML2531_RS00745_p.BML2526 insolico UniProt ID   _
Length   622 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 622 a.a.        Molecular weight: 69161.45 Da        Isoelectric Point: 6.8683

>WP_301951439.1 conjugative transfer system coupling protein TraD [Providencia rettgeri]
MYEVCGWGTGVLATVGVGTYLSMPLTATLSAAAIQSIFAMKSLPNAIKIAVLHKNLKTRPAPTFTSAYDV
VKEMMNNRDTTLIGKGFTWRHEHGQRAYEILKSGVADRFLPNDHESMGHGWIHKLGNSNEWISVPDDLMT
LHTSLTGTTGSGKTTLYKLLILQAALKRQPLILIDPKNDEELADYMYKCMKLMEREDDFYYLSIAHLDKS
NRISPISNYSNSTEVASRIISVIQKADNTTDPFISFATMTLTTIVQLMNFANVKPTLVNIKAQLGTNLGN
FAELLVKAIDKLGYELFPDVYDSLLDRRLEHQSMTRTTGTIENHAGIRITIYLNDIAKIKEYTFIKSGID
LFQHNREHFQKMILTALPVLSMLTSDGLDEVLSPSSENIDDERVITNMKDIINTNGMMYLGLNSLADGDK
GNAVGSIFLSDITAVAADIYNYAKPRGEKKRDTNILIDEAAEVINDQVIRLQNKGRGAGFKLFIASQSTT
DYVATLGSEAKKEQVSINANHNIALRTINIQGQKDLIERIPTTNFKYIQRGHGTSSGEDPEKITGSIGER
LMEVESELFPPQLLGNLPNLEFCAILKAGNICKGQIPIVQLPTSEKEVLKLKMLIKEFNKAR

  Protein domains


Predicted by InterproScan.

Helicase HerA, central domain (DUF87)

(136-179)

TraM recognition site of TraD and TraG (TraG-D_C)

(455-578)

  Protein structure



No available structure.




Host bacterium

ID   14357 GenBank   NZ_LC507075
Plasmid name   p.BML2526 Incompatibility group   IncA/C2
Plasmid size   204791 bp Coordinate of oriT [Strand]   203846..203950 [+]
Host baterium   Providencia rettgeri strain BML2526

Cargo genes

Drug resistance gene   blaTEM-1B, blaCTX-M-2, blaIMP-10, aac(6')-Iae, qacE, sul1
Virulence gene   chuV, shuY, chuW, chuT
Metal resistance gene   cueR/ybbI, merA, merT, merR
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -