Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   113911
Name   oriT_pKCA3 in_silico
Organism   Latilactobacillus sakei strain KCA311
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_KF559315 (1842..1866 [+], 25 nt)
oriT length   25 nt
IRs (inverted repeats)      1..9, 16..24  (TAAAGTATA..TATACTTTA)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 25 nt

>oriT_pKCA3
TAAAGTATAGTGGGTTATACTTTAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   8932 GenBank   WP_172685292
Name   mobV_HTB34_RS00015_pKCA3 insolico UniProt ID   _
Length   361 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 361 a.a.        Molecular weight: 41931.43 Da        Isoelectric Point: 9.8244

>WP_172685292.1 MobV family relaxase [Latilactobacillus sakei]
MSFAVARMTKLKADNLVGVGNHDQRKTTNHSNEDIDVSRSHLNYDLVAGRTNNFKTDIEAYINENKASKR
AVRKDAVLVNEWILTSDKDFFEQLDEAKTRKYFETAKQYFADNYGDENIRYAVVHMDEKTPHMHMGIVPF
DDDKKLSAKRIFNREALQRIQEKLPQYLKKNGFDVQRGNKNKERKNLSVPEYKAMREDLKKIETEKQETQ
AKLADTKKQLDRIKPRDTKKIASKPTLMNKNKVTVDKSDLADLEQRAVTSDAYNFEKIHLEVENHSLRND
LREAKGQNYELKKENERLQKLVGTLQGIIRNVDEFLHKKLGINLPDKWLERAGLKEPSKKAPESSQELDR
HKSDELGGPHL

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-194)


  Protein structure



No available structure.




Host bacterium

ID   14346 GenBank   NZ_KF559315
Plasmid name   pKCA3 Incompatibility group   -
Plasmid size   3052 bp Coordinate of oriT [Strand]   1842..1866 [+]
Host baterium   Latilactobacillus sakei strain KCA311

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -