Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 113905
• Name: oriT_13420|unnamed2
• Organism: Staphylococcus aureus strain 13420
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP021143 (3883..4002 [+], 120 nt)
• oriT length: 120 nt
• IRs (inverted repeats): 52..58, 62..68 (TTGGGGA..TCCCCAA) 22..29, 34..41 (ATTTTTTC..GAAAAAAT) 1..8, 14..21 (AGTGGCTA..TAGCCACT)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 120 nt

>oriT_13420|unnamed2
AGTGGCTAGCAATTAGCCACTATTTTTTCGCCAGAAAAAATCCTAAGGGGCTTGGGGAATATCCCCAAAAAGCAGGCGATGCTACCACGTTAGTGGCTAGCAAAGCCAATGCTTGCCAAA

oriT secondary structure

Predicted by RNAfold.

Relaxase

Relaxase_CAY55_RS14410_13420|unnamed2

• ID: 8929
• GenBank: WP_000246204
• Name: Relaxase_CAY55_RS14410_13420|unnamed2
• UniProt ID: _
• Length: 335 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 335 a.a.
• Molecular weight: 38770.60 Da
• Isoelectric Point: 8.2694

>WP_000246204.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus aureus]
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQAFKPDEVTPE
QCNQLGLELAEKFAPNHQVAVYTHNDTDHVHNHIVINSINLETGKKFNNNKQALRDLRNFNDEVCRNHGL
SVPEKDTARLRYTQTEKAIADPNIKSTAQYSWKDEIREAIDQSQATNIDELKTHLSQYGIEIERVTPKSI
TYRHLAEDKKVRGRRLGENYNKGGIEDGFERQIQRRQQERDSEHDYQPKRRTSNRDESTERDTSITQSDW
DRFAKDTNELERSRKAAESARLAHEKARRDREERIQAERATRKNINNDRDHGYEL

Protein domains

Predicted by InterproScan.

• Relaxase/Mobilisation nuclease domain (Relaxase) (9-242)

Protein structure

No available structure.

Host bacterium

• ID: 14340
• GenBank: NZ_CP021143
• Plasmid name: 13420|unnamed2
• Incompatibility group: -
• Plasmid size: 8110 bp
• Coordinate of oriT [Strand]: 3883..4002 [+]
• Host baterium: Staphylococcus aureus strain 13420

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -