Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 113901
• Name: oriT_pTM18-3
• Organism: Aeromonas sobria strain TM18
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_MF770242 (4322..4354 [-], 33 nt)
• oriT length: 33 nt
• IRs (inverted repeats): 4..9, 13..18 (GCAAAC..GTTTGC)
• Location of nic site: 27..28
• Conserved sequence flanking the nic site: GTGCGCCCTT
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 33 nt

>oriT_pTM18-3
CACGCAAACGAAGTTTGCCTAAGTGCGCCCTTA

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobQ_CJP16_RS00005_pTM18-3

• ID: 8926
• GenBank: WP_172691897
• Name: mobQ_CJP16_RS00005_pTM18-3
• UniProt ID: _
• Length: 514 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 514 a.a.
• Molecular weight: 57616.55 Da
• Isoelectric Point: 7.1156

>WP_172691897.1 MobQ family relaxase [Aeromonas sobria]
MAIYHCSVKTFSRRNGQSATAAAAYRAGEKLLDEQTGELHDYRKKGGVISATMILPSHAPLWASDRARLW
NEVERAETRINSTVAREFEIALPHELSPDDRERLAHEFARELVEEHGFAADVAIHAPPAFKKGDTGKMID
NQNHHAHILLSTRRLGPDGFTQKTREFDAKGRSDKASERFGPALIEYWRERFGVLQNQFLEAAGVEQKVD
HRSHQARGLAAEPTRHLGPAVVGFERRTGIDSEKRRSEARAVRAVDERVQALDRAARELAELDAQEVVIA
AELAENQRYVAMDDAELSDVISNAQPTPIDHQVASSWEVSQAKRAVTDLESKHDSVARQIESWEEGHSFK
TWLNSKGIGGAELDGLRTGLAQLGNRITKALGKVREVTEATHDRLWPEYNRRLTLFDELRELRQAKRQRK
ALQVEVAQSLEFSTIALQRSMGVLGWADGGKEWSACPKRLQTRIEDYLSTSGGEREALIAEIGRSVEVRD
LLARQKRGLDPAPEPERNRGPKLG

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (17-237)

Protein structure

No available structure.

Host bacterium

• ID: 14336
• GenBank: NZ_MF770242
• Plasmid name: pTM18-3
• Incompatibility group: -
• Plasmid size: 4393 bp
• Coordinate of oriT [Strand]: 4322..4354 [-]
• Host baterium: Aeromonas sobria strain TM18

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -