Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 113756 |
| Name | oriT_KMGR2-43|unnamed3  |
| Organism | Lactococcus lactis subsp. lactis strain KMGR2-43 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP129295 (15454..15590 [-], 137 nt) |
| oriT length | 137 nt |
| IRs (inverted repeats) | 21..28, 42..49 (AAAAGGGG..CCCCTTTT) 25..30, 39..44 (GGGGAA..TTCCCC) |
| Location of nic site | 104..105 |
| Conserved sequence flanking the nic site |
GCTTGCAGTA |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 137 nt
>oriT_KMGR2-43|unnamed3
CGACACACTCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGTTTTATATTTGCTATTTTGTT
CGACACACTCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGTTTTATATTTGCTATTTTGTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 8803 | GenBank | WP_301536266 |
| Name | Relaxase_QYH60_RS13635_KMGR2-43|unnamed3 |
UniProt ID | _ |
| Length | 503 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 503 a.a. Molecular weight: 58820.56 Da Isoelectric Point: 7.9561
>WP_301536266.1 relaxase/mobilization nuclease domain-containing protein [Lactococcus lactis]
MTVIYMPRDTSGVIHSKGQLSRALNYIVNPEKTKGGELVSGQNINVPNNAYDEMLLTREMAILSGKSEIK
NERFGYHFVQSFSPEDNLTPEQVHEIGLKTMKAYLGESAEFVIATHTDKEHLHNHIILNATNPKTLKKFH
QSKNQLEELKEISDVISKEYGCKIIDRNLKNSHKKYQVYLAKNSYRKEIKSKIKFLLSHANNWNDFKNKA
TTLGLIVDDKGKYTTYQLSGTSQERKVRDRSLKNQAFMKEAISERLKENEVVYTESEVKELWEDNQTIQD
KEQETEIEMLIEDWQVEKETADYLYVNINIGLEREQRKSAIKIPARCVDKLENGNYQVFLKKQDRFYFVD
SKNPENNKIMLGKTVAKNLQNQSGSVPLYSNNAKIKLKQLFNEFDFLISKGLDFDTSFEAIGKELEQTYY
QTESILENLDKKILEYVEENKAYARPNTRILKTIENLQKERTDLHKTLKQVEKEMLYYDKSVDRYEDYQQ
EHTKNKSQHSPRL
MTVIYMPRDTSGVIHSKGQLSRALNYIVNPEKTKGGELVSGQNINVPNNAYDEMLLTREMAILSGKSEIK
NERFGYHFVQSFSPEDNLTPEQVHEIGLKTMKAYLGESAEFVIATHTDKEHLHNHIILNATNPKTLKKFH
QSKNQLEELKEISDVISKEYGCKIIDRNLKNSHKKYQVYLAKNSYRKEIKSKIKFLLSHANNWNDFKNKA
TTLGLIVDDKGKYTTYQLSGTSQERKVRDRSLKNQAFMKEAISERLKENEVVYTESEVKELWEDNQTIQD
KEQETEIEMLIEDWQVEKETADYLYVNINIGLEREQRKSAIKIPARCVDKLENGNYQVFLKKQDRFYFVD
SKNPENNKIMLGKTVAKNLQNQSGSVPLYSNNAKIKLKQLFNEFDFLISKGLDFDTSFEAIGKELEQTYY
QTESILENLDKKILEYVEENKAYARPNTRILKTIENLQKERTDLHKTLKQVEKEMLYYDKSVDRYEDYQQ
EHTKNKSQHSPRL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 14191 | GenBank | NZ_CP129295 |
| Plasmid name | KMGR2-43|unnamed3 | Incompatibility group | - |
| Plasmid size | 36078 bp | Coordinate of oriT [Strand] | 15454..15590 [-] |
| Host baterium | Lactococcus lactis subsp. lactis strain KMGR2-43 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | AcrID1 |