Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 113754 |
| Name | oriT_p6MO13m20  |
| Organism | Enterobacter asburiae strain MO13m20 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP129506 (2419..2478 [+], 60 nt) |
| oriT length | 60 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_p6MO13m20
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 8802 | GenBank | WP_301524528 |
| Name | Relaxase_QOM23_RS23035_p6MO13m20 |
UniProt ID | _ |
| Length | 190 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 190 a.a. Molecular weight: 21242.22 Da Isoelectric Point: 9.3516
>WP_301524528.1 relaxase/mobilization nuclease domain-containing protein [Enterobacter asburiae]
MIVKFHPRGRGGGAGPVDYLLGKDRQREGATVLQGKPEEVRELIDASPYVKKYTSGVLSFAEADLPSGQR
EKLMASFERVLMPGLDKDQYSILWVEHRDKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSALPKAKQEAAEAITRSCLIRGAENPSGCH
MIVKFHPRGRGGGAGPVDYLLGKDRQREGATVLQGKPEEVRELIDASPYVKKYTSGVLSFAEADLPSGQR
EKLMASFERVLMPGLDKDQYSILWVEHRDKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSALPKAKQEAAEAITRSCLIRGAENPSGCH
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Auxiliary protein
| ID | 5192 | GenBank | WP_012565228 |
| Name | WP_012565228_p6MO13m20 |
UniProt ID | A0A0T9N5T4 |
| Length | 161 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 161 a.a. Molecular weight: 17928.55 Da Isoelectric Point: 10.2048
>WP_012565228.1 MULTISPECIES: MbeB family mobilization protein [Bacteria]
MNSLLTLAKDLEQKSKAQQQNTGEMLKAAFSEHEKSVKAELNESAKRISAAILDHDRKLSSAMSQRTKGM
VRMVSQTWLTIVLVSALLIASSAGILWWQGQQILDNYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCV
KVNPEAGRFGEDSSWMILAGK
MNSLLTLAKDLEQKSKAQQQNTGEMLKAAFSEHEKSVKAELNESAKRISAAILDHDRKLSSAMSQRTKGM
VRMVSQTWLTIVLVSALLIASSAGILWWQGQQILDNYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCV
KVNPEAGRFGEDSSWMILAGK
Protein domains
Predicted by InterproScan.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A0T9N5T4 |
| ID | 5193 | GenBank | WP_015059937 |
| Name | WP_015059937_p6MO13m20 |
UniProt ID | K4K1S3 |
| Length | 107 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 107 a.a. Molecular weight: 11827.61 Da Isoelectric Point: 9.5512
>WP_015059937.1 MULTISPECIES: MobC family plasmid mobilization relaxosome protein [Bacteria]
MLTMWVTEGEHRRLLERCDGRQLAAWMRQTCLDEKPARSGKLPSISPALLRQLAGMGNNLNQIARRVNAG
GGTGHDRVQIVAALMAIDAGLERLRHAVLEKGTDDDR
MLTMWVTEGEHRRLLERCDGRQLAAWMRQTCLDEKPARSGKLPSISPALLRQLAGMGNNLNQIARRVNAG
GGTGHDRVQIVAALMAIDAGLERLRHAVLEKGTDDDR
Protein domains
Predicted by InterproScan.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | K4K1S3 |
Host bacterium
| ID | 14189 | GenBank | NZ_CP129506 |
| Plasmid name | p6MO13m20 | Incompatibility group | Col440II |
| Plasmid size | 6408 bp | Coordinate of oriT [Strand] | 2419..2478 [+] |
| Host baterium | Enterobacter asburiae strain MO13m20 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |