Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 113448 |
| Name | oriT_16K-1-R1|unnamed2  |
| Organism | Clostridium sp. 16K-1-R1 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP046517 (21447..21594 [-], 148 nt) |
| oriT length | 148 nt |
| IRs (inverted repeats) | 133..138, 142..147 (ATACAT..ATGTAT) 117..123, 137..143 (ATTATAT..ATATAAT) 119..125, 129..135 (TATATAT..ATATATA) 121..127, 129..135 (TATATAT..ATATATA) 123..128, 130..135 (TATATA..TATATA) 112..118, 122..128 (TATATAT..ATATATA) 112..118, 120..126 (TATATAT..ATATATA) 112..117, 119..124 (TATATA..TATATA) 20..25, 28..33 (TTTAAA..TTTAAA) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 148 nt
>oriT_16K-1-R1|unnamed2
AAGGAACTTTACAGGGAACTTTAAAAATTTAAATTGATATAGAAGTTCCCTGTATTAATATTAGTATTTTAAAGAGATATATCATTATTAGTTCCTTATCGTATTATAGAGTATATATTATATATATAATATATACATATAATGTATT
AAGGAACTTTACAGGGAACTTTAAAAATTTAAATTGATATAGAAGTTCCCTGTATTAATATTAGTATTTTAAAGAGATATATCATTATTAGTTCCTTATCGTATTATAGAGTATATATTATATATATAATATATACATATAATGTATT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
T4CP
| ID | 9954 | GenBank | WP_252597743 |
| Name | tcpA_GOM42_RS15280_16K-1-R1|unnamed2 |
UniProt ID | _ |
| Length | 527 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 527 a.a. Molecular weight: 60225.47 Da Isoelectric Point: 6.1216
>WP_252597743.1 FtsK/SpoIIIE domain-containing protein [Clostridium sp. 16K-1-R1]
MSSDWEKKVNQEVENGLNAIINEIANVLKIFFFRVGLGFKKSWKNKKLFIGFFLSFLIPIAARIKSDYFL
VDTKFYFKIIYFLTFIAPLFYMVIVSFVKNKEDKRNAEYRLAFEQLNFVGADSKTPILKSFIEDKGTRID
EITFESMIPIETWKSYIPQLQTSLNISIISIEQGASKRIVIIKSMAGDAKIPKYLPWDDKYIEEQEGVVV
VGQTFSGNIKIDLNKSPHILSAGETGSGKSVILRCILWQLLKQGAIAYMVDFKGGVEFGLEYEKVGQVIT
EVDAAEKLFKYLVDENAKRLKLLRESGSKNIGEYNKKFEGEELKRIIVVIDELAELMDKTGVDDETRAKL
VRIEGYTSTLARLSRATGINLCIGVQRPDAKVITGQIKNNVPVRICGRFADSKASEIVLSNTKAKDLPEV
KGRFLFKLGADTVQFQAFYFDDDKHFIPNKILKLRKDEIEDKKVGLDLNKEKLIDNDLMNSVNEKFEIKE
VKSMDSNIENEDDSKFENFEEQNKTENLKSTINDDYE
MSSDWEKKVNQEVENGLNAIINEIANVLKIFFFRVGLGFKKSWKNKKLFIGFFLSFLIPIAARIKSDYFL
VDTKFYFKIIYFLTFIAPLFYMVIVSFVKNKEDKRNAEYRLAFEQLNFVGADSKTPILKSFIEDKGTRID
EITFESMIPIETWKSYIPQLQTSLNISIISIEQGASKRIVIIKSMAGDAKIPKYLPWDDKYIEEQEGVVV
VGQTFSGNIKIDLNKSPHILSAGETGSGKSVILRCILWQLLKQGAIAYMVDFKGGVEFGLEYEKVGQVIT
EVDAAEKLFKYLVDENAKRLKLLRESGSKNIGEYNKKFEGEELKRIIVVIDELAELMDKTGVDDETRAKL
VRIEGYTSTLARLSRATGINLCIGVQRPDAKVITGQIKNNVPVRICGRFADSKASEIVLSNTKAKDLPEV
KGRFLFKLGADTVQFQAFYFDDDKHFIPNKILKLRKDEIEDKKVGLDLNKEKLIDNDLMNSVNEKFEIKE
VKSMDSNIENEDDSKFENFEEQNKTENLKSTINDDYE
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 13883 | GenBank | NZ_CP046517 |
| Plasmid name | 16K-1-R1|unnamed2 | Incompatibility group | - |
| Plasmid size | 69833 bp | Coordinate of oriT [Strand] | 21447..21594 [-] |
| Host baterium | Clostridium sp. 16K-1-R1 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |