Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 113381 |
| Name | oriT_SCSIO 76264|p6  |
| Organism | Paracoccus sediminicola strain SCSIO 76264 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP115774 (13999..14024 [+], 26 nt) |
| oriT length | 26 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 26 nt
>oriT_SCSIO 76264|p6
CGGAGAGTTTGCATAAGTGCGCCCTT
CGGAGAGTTTGCATAAGTGCGCCCTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 8578 | GenBank | WP_271118392 |
| Name | mobQ_PAF18_RS17480_SCSIO 76264|p6 |
UniProt ID | _ |
| Length | 398 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 398 a.a. Molecular weight: 44604.07 Da Isoelectric Point: 5.9370
>WP_271118392.1 MobQ family relaxase [Paracoccus sediminicola]
MASYHLSVKTIKRSAGRSATAAAAYRSGERINCQREGRVHDYTAKQGIEDSFIVAPEHAPAWAQDRAALW
NAAEARETRKNSVTAREWELALPSEIGAEERAEITRVFAEQLVERYGVAVDVAIHAPHREGDQRNHHAHV
LTSTRALGAEGFTDKTRVLDAAKTGGIEIEAMRETWAELQNRALERVGERERVDHRSLDAQRESALERGD
ALSAEELDRAPEVKLGPAANAMERRAMREAVAEGREYAPVTERGRAVHGARQARAMVRELRERVDLARET
YGAEREAGQGRVSAGLAALRAAAEKDRGREDSPEQGHEDIRERLSRVVGREVGEEASERDTPAQGRESVK
DRLGAILDRSKHVQVERDSELERDPENEREEHEKDQHRERDRGEGWSL
MASYHLSVKTIKRSAGRSATAAAAYRSGERINCQREGRVHDYTAKQGIEDSFIVAPEHAPAWAQDRAALW
NAAEARETRKNSVTAREWELALPSEIGAEERAEITRVFAEQLVERYGVAVDVAIHAPHREGDQRNHHAHV
LTSTRALGAEGFTDKTRVLDAAKTGGIEIEAMRETWAELQNRALERVGERERVDHRSLDAQRESALERGD
ALSAEELDRAPEVKLGPAANAMERRAMREAVAEGREYAPVTERGRAVHGARQARAMVRELRERVDLARET
YGAEREAGQGRVSAGLAALRAAAEKDRGREDSPEQGHEDIRERLSRVVGREVGEEASERDTPAQGRESVK
DRLGAILDRSKHVQVERDSELERDPENEREEHEKDQHRERDRGEGWSL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 9908 | GenBank | WP_271118394 |
| Name | t4cp2_PAF18_RS17490_SCSIO 76264|p6 |
UniProt ID | _ |
| Length | 554 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 554 a.a. Molecular weight: 59838.44 Da Isoelectric Point: 6.5986
>WP_271118394.1 type IV secretory system conjugative DNA transfer family protein [Paracoccus sediminicola]
MRTVGAILGGFARLVAGLVVAPFLLGWLALWLVLGAGIGALVATPFVFAIFDGPPGESAWQWVVVAPLML
CGSILAFGHWREISGADRFLGGGAGDSHGSARFAGTRELRKLERADGLLIGRSQRGRLLRYDGPAHLLTL
APTRAGKGVGTVIPNLLAVDRSVLVIDPKGENARITGTARERFGTVHVLDPFGVSGRPSAAYNPLDRLSA
DSPDIGEDAASLAEALVVDPPGQSGDAHWNEEAKALLGGLIMFCVAHEEPERRTLASVREYLTLPPDRLS
ALMALMQDSDAAEGLVARAANRFAGKADREAASVLSNAQRHTHFLDSPRIVKVMARSDFTFAELRHRTTS
VFLVLPPNRLDAYSRWLRLLVAQGLQDIARDAERPPEPRSGAETPGERPSGPALFLLDEFAALGRLEAVE
RAMGLMAGYGLQLWPILQDMSQLRDLYGARASTFVANAGVQQVFGVNDFETAKWLSQSMGQETIGYRTES
RRPGDLPTTGTSLTGRDLLTPDEIMQLPSECQLLRLQGQPPAIARKLRYYADLEFAGLFTPEAR
MRTVGAILGGFARLVAGLVVAPFLLGWLALWLVLGAGIGALVATPFVFAIFDGPPGESAWQWVVVAPLML
CGSILAFGHWREISGADRFLGGGAGDSHGSARFAGTRELRKLERADGLLIGRSQRGRLLRYDGPAHLLTL
APTRAGKGVGTVIPNLLAVDRSVLVIDPKGENARITGTARERFGTVHVLDPFGVSGRPSAAYNPLDRLSA
DSPDIGEDAASLAEALVVDPPGQSGDAHWNEEAKALLGGLIMFCVAHEEPERRTLASVREYLTLPPDRLS
ALMALMQDSDAAEGLVARAANRFAGKADREAASVLSNAQRHTHFLDSPRIVKVMARSDFTFAELRHRTTS
VFLVLPPNRLDAYSRWLRLLVAQGLQDIARDAERPPEPRSGAETPGERPSGPALFLLDEFAALGRLEAVE
RAMGLMAGYGLQLWPILQDMSQLRDLYGARASTFVANAGVQQVFGVNDFETAKWLSQSMGQETIGYRTES
RRPGDLPTTGTSLTGRDLLTPDEIMQLPSECQLLRLQGQPPAIARKLRYYADLEFAGLFTPEAR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 13816 | GenBank | NZ_CP115774 |
| Plasmid name | SCSIO 76264|p6 | Incompatibility group | - |
| Plasmid size | 16817 bp | Coordinate of oriT [Strand] | 13999..14024 [+] |
| Host baterium | Paracoccus sediminicola strain SCSIO 76264 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |