Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 113380 |
| Name | oriT_SCSIO 76264|p5  |
| Organism | Paracoccus sediminicola strain SCSIO 76264 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP115773 (21510..21529 [+], 20 nt) |
| oriT length | 20 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 20 nt
>oriT_SCSIO 76264|p5
GTTTGCATAAGTGCGCCCTT
GTTTGCATAAGTGCGCCCTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 8577 | GenBank | WP_271118380 |
| Name | mobQ_PAF18_RS17395_SCSIO 76264|p5 |
UniProt ID | _ |
| Length | 428 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 428 a.a. Molecular weight: 48849.85 Da Isoelectric Point: 6.6559
>WP_271118380.1 MobQ family relaxase [Paracoccus sediminicola]
MASYHLSVKTIKRSAGRSATAAAAYRVGERIECQREGRVHDYTRKQGIEETFILAPKDAPDWATDRSRLW
NEVEASETRRNSVTAREWELALPSEISDEDRSQITRDFAQELVNRYGVAVDVAIHAPHREGDQRNHHAHV
LTSTRKLEAEGFTTKTRVLDSAKTGGVEIEQMRGLWAELQNRALERAGEVERVDHRSLEKQRDAAQERGD
KLSAEELDRDPELKLGPAANSMERRAKWMAERQGREYKPVTERGAVVHAARQARAAFREMRARLELARET
YGIEREARQGRVSAGLAALRAATAKDRDRNPDDFRERLARVVGRSEEQDDTPKPEGRNYARERLKEIMEK
DGGRDGQAAVHKLDGHSEYGLGEDTGREARKPSVNERLKDVLNKPRERLEIEDEREQDRGDDENENTRDR
DRGEGHSL
MASYHLSVKTIKRSAGRSATAAAAYRVGERIECQREGRVHDYTRKQGIEETFILAPKDAPDWATDRSRLW
NEVEASETRRNSVTAREWELALPSEISDEDRSQITRDFAQELVNRYGVAVDVAIHAPHREGDQRNHHAHV
LTSTRKLEAEGFTTKTRVLDSAKTGGVEIEQMRGLWAELQNRALERAGEVERVDHRSLEKQRDAAQERGD
KLSAEELDRDPELKLGPAANSMERRAKWMAERQGREYKPVTERGAVVHAARQARAAFREMRARLELARET
YGIEREARQGRVSAGLAALRAATAKDRDRNPDDFRERLARVVGRSEEQDDTPKPEGRNYARERLKEIMEK
DGGRDGQAAVHKLDGHSEYGLGEDTGREARKPSVNERLKDVLNKPRERLEIEDEREQDRGDDENENTRDR
DRGEGHSL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 9907 | GenBank | WP_271118381 |
| Name | t4cp2_PAF18_RS17405_SCSIO 76264|p5 |
UniProt ID | _ |
| Length | 550 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 550 a.a. Molecular weight: 60309.37 Da Isoelectric Point: 7.5387
>WP_271118381.1 type IV secretory system conjugative DNA transfer family protein [Paracoccus sediminicola]
MRGVIRLFDGLFRFFGRLIFTPILLGWMIGAVLFGAMIGFIIGGVVAMTAFGPPLGHSAWEWIIIAPPVF
IGAVFGFQYWRKTSGADAFFGLTGDSHGSARFASRKELKKLQGNDGLLIGRNPGTGRLLRYDGPAHLITL
APTRAGKGVGTVIPNLLAVERSVLVIDPKGENARIAGEARRRFGTTHVLDPFDVSGMPSAAYNPLDRLTP
DSLDLGEDAASLTVALVMDPPGQVTEAHWNEEAKAILGGLIMFCVCHEDRDRRCLATVREYLTLPPEKLR
ALLELMQDSDAAGGLIARAANRFLGKADREAASVLSNAQRHTHFLDSPRIAKVTSRSDFHFSDLRHRITS
VFLVLPPNRMDAYSRWLRLLVSQALQDIARDAEASVGAQGASQRLKAPALFLLDEFAALGRLEAVERAMG
LMAGYGLQLWPILQDMSQLKDLYGERAGTFIANAGVQQVFGVNDFETAKWLSQMIGQETTGFQTDSYKPG
DSPSFSNNLTGRDLLTPDEIMQMPPELQLLRVQGQPSALAQKLRYYADPEFKRLFVPQDA
MRGVIRLFDGLFRFFGRLIFTPILLGWMIGAVLFGAMIGFIIGGVVAMTAFGPPLGHSAWEWIIIAPPVF
IGAVFGFQYWRKTSGADAFFGLTGDSHGSARFASRKELKKLQGNDGLLIGRNPGTGRLLRYDGPAHLITL
APTRAGKGVGTVIPNLLAVERSVLVIDPKGENARIAGEARRRFGTTHVLDPFDVSGMPSAAYNPLDRLTP
DSLDLGEDAASLTVALVMDPPGQVTEAHWNEEAKAILGGLIMFCVCHEDRDRRCLATVREYLTLPPEKLR
ALLELMQDSDAAGGLIARAANRFLGKADREAASVLSNAQRHTHFLDSPRIAKVTSRSDFHFSDLRHRITS
VFLVLPPNRMDAYSRWLRLLVSQALQDIARDAEASVGAQGASQRLKAPALFLLDEFAALGRLEAVERAMG
LMAGYGLQLWPILQDMSQLKDLYGERAGTFIANAGVQQVFGVNDFETAKWLSQMIGQETTGFQTDSYKPG
DSPSFSNNLTGRDLLTPDEIMQMPPELQLLRVQGQPSALAQKLRYYADPEFKRLFVPQDA
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 13815 | GenBank | NZ_CP115773 |
| Plasmid name | SCSIO 76264|p5 | Incompatibility group | - |
| Plasmid size | 24265 bp | Coordinate of oriT [Strand] | 21510..21529 [+] |
| Host baterium | Paracoccus sediminicola strain SCSIO 76264 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |