Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 113379 |
| Name | oriT_SCSIO 76264|p4  |
| Organism | Paracoccus sediminicola strain SCSIO 76264 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP115772 (21886..21905 [+], 20 nt) |
| oriT length | 20 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 20 nt
>oriT_SCSIO 76264|p4
GTTTGCATAAGTGCGCCCTT
GTTTGCATAAGTGCGCCCTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 8576 | GenBank | WP_271118356 |
| Name | mobQ_PAF18_RS17255_SCSIO 76264|p4 |
UniProt ID | _ |
| Length | 386 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 386 a.a. Molecular weight: 41946.67 Da Isoelectric Point: 6.7365
>WP_271118356.1 MobQ family relaxase [Paracoccus sediminicola]
MASYHLSVKTVKRSAGRSATAAAAYRSGSVIVCHRDGRVHDYSAKGGVAETFIVVPEDSPVWAQDRAALW
NAAEARETRRNSVTAREWELALPVEISDADRSAIARDFAQALVDRYGVAADVAIHAPHREGDQRNHHAHV
LTTTRALGAGGLGAKTRILDAAQTGGAEIEEMRALWGAMQNRALERAGVSERVDHRSLEAQRAVALEQGD
ALSAEELDRAPEVKLGPAANAIERREMRAAEAEGRAYAPVTERGAKVHAARQARALFAEMRERVEIARDA
YGIAREQGEGRVAAGLAALRAAVGKDGVGRELGEGDSADDLRDRLATILGKDGETRQARSGQRINERLAD
LLGKERHARERPDMGEERDKERTRSIGLERDEGFEL
MASYHLSVKTVKRSAGRSATAAAAYRSGSVIVCHRDGRVHDYSAKGGVAETFIVVPEDSPVWAQDRAALW
NAAEARETRRNSVTAREWELALPVEISDADRSAIARDFAQALVDRYGVAADVAIHAPHREGDQRNHHAHV
LTTTRALGAGGLGAKTRILDAAQTGGAEIEEMRALWGAMQNRALERAGVSERVDHRSLEAQRAVALEQGD
ALSAEELDRAPEVKLGPAANAIERREMRAAEAEGRAYAPVTERGAKVHAARQARALFAEMRERVEIARDA
YGIAREQGEGRVAAGLAALRAAVGKDGVGRELGEGDSADDLRDRLATILGKDGETRQARSGQRINERLAD
LLGKERHARERPDMGEERDKERTRSIGLERDEGFEL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 9906 | GenBank | WP_271118358 |
| Name | t4cp2_PAF18_RS17265_SCSIO 76264|p4 |
UniProt ID | _ |
| Length | 590 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 590 a.a. Molecular weight: 63587.95 Da Isoelectric Point: 5.9630
>WP_271118358.1 type IV secretory system conjugative DNA transfer family protein [Paracoccus sediminicola]
MIWVGRLFRFLAGMAAMAIAVPWLLFQLAVLLLLASGAAIVTFMLVRGLILGEAVVTDPTSVVGRLGFLV
VQLAFWALAVRFWAYLHGFDHLFARRGNSHGSARFSSKAERAAFRQGDGLLIGRDPETGRLLRYDGPAHL
LTLAPTRAGKGVGTIIPNLLTANRPVLVIDPKGENARIAAKARERFGPVHVLDPFGVTGLPSAACNPMAG
LDPGDPDLGDEAATLAEALVMDPPGQVHDAHWNEEAKSLLAGLILFCACHEPPERRTLASVRDYLSLPPG
KWAALLELMQESDAAGGLIARAANRFAGKAEREAASVMSNAQRHTRFLDSPRIVAALSRSDVDFADLRRG
VTSIFLVLPPNRLDAYSRWLRLMLSQALQDIARAAERPGEAHSAADTPAGALNGSESATEALEVPEAAQE
AGDPPERRRDAARAVPAPALFLLDEFAALGRLEAVERGMGLMAGYGIQLWPILQDLSQLRDLYGARAGTF
LANAAVQQVFGVNDLDTAKWLSESIGKETAYGQSESHQPGEPASLTTAPLARDLLTPDEIMQMPAHLQLL
RVQGQPVMLAEKLRYYADSEFENLFTPQPA
MIWVGRLFRFLAGMAAMAIAVPWLLFQLAVLLLLASGAAIVTFMLVRGLILGEAVVTDPTSVVGRLGFLV
VQLAFWALAVRFWAYLHGFDHLFARRGNSHGSARFSSKAERAAFRQGDGLLIGRDPETGRLLRYDGPAHL
LTLAPTRAGKGVGTIIPNLLTANRPVLVIDPKGENARIAAKARERFGPVHVLDPFGVTGLPSAACNPMAG
LDPGDPDLGDEAATLAEALVMDPPGQVHDAHWNEEAKSLLAGLILFCACHEPPERRTLASVRDYLSLPPG
KWAALLELMQESDAAGGLIARAANRFAGKAEREAASVMSNAQRHTRFLDSPRIVAALSRSDVDFADLRRG
VTSIFLVLPPNRLDAYSRWLRLMLSQALQDIARAAERPGEAHSAADTPAGALNGSESATEALEVPEAAQE
AGDPPERRRDAARAVPAPALFLLDEFAALGRLEAVERGMGLMAGYGIQLWPILQDLSQLRDLYGARAGTF
LANAAVQQVFGVNDLDTAKWLSESIGKETAYGQSESHQPGEPASLTTAPLARDLLTPDEIMQMPAHLQLL
RVQGQPVMLAEKLRYYADSEFENLFTPQPA
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 13814 | GenBank | NZ_CP115772 |
| Plasmid name | SCSIO 76264|p4 | Incompatibility group | - |
| Plasmid size | 24739 bp | Coordinate of oriT [Strand] | 21886..21905 [+] |
| Host baterium | Paracoccus sediminicola strain SCSIO 76264 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |