Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 113287 |
| Name | oriT_pYUYZMCS6  |
| Organism | Salmonella enterica subsp. enterica serovar Indiana strain YZ20MCS6 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP098830 (3234..3293 [+], 60 nt) |
| oriT length | 60 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_pYUYZMCS6
GGGTGTCGGGGCGCAGCCCTGACCCAGTTCACAGAGCGATAGCGATGTGTATACTGGCTT
GGGTGTCGGGGCGCAGCCCTGACCCAGTTCACAGAGCGATAGCGATGTGTATACTGGCTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 13722 | GenBank | NZ_CP098830 |
| Plasmid name | pYUYZMCS6 | Incompatibility group | - |
| Plasmid size | 3373 bp | Coordinate of oriT [Strand] | 3234..3293 [+] |
| Host baterium | Salmonella enterica subsp. enterica serovar Indiana strain YZ20MCS6 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |