Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   113088
Name   oriT_K6D_p2 in_silico
Organism   Enterococcus faecium strain K6D
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_AP027296 (7521..7558 [+], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      14..22, 29..37  (TAAAGTATA..TATACTTTA)
 2..8, 13..19  (ACTTTAT..ATAAAGT)
Location of nic site      27..28
Conserved sequence flanking the
  nic site  
 
 GTGTGTTATA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 38 nt

>oriT_K6D_p2
CACTTTATGAATATAAAGTATAGTGTGTTATACTTTAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


T4CP


ID   9674 GenBank   WP_159373489
Name   t4cp2_QUD90_RS14060_K6D_p2 insolico UniProt ID   _
Length   508 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 508 a.a.        Molecular weight: 56880.09 Da        Isoelectric Point: 4.6922

>WP_159373489.1 MULTISPECIES: VirD4-like conjugal transfer protein, CD1115 family [Enterococcus]
MNGTILGMVDKQIIYQNNSTKPNRNVFVVGGPGSYKTQSVVITNLFNETQNSIVVTDPKGELYEKTAGVK
VAQGYQVHVVNFANMIHSDRYNPFDYIDRDIQAENVATKIVQSENKEGKKDVWFSTQRQLLKALILFVMN
HREPKQRNLAGVTNVLQKFDVEPGEDETDSPLDSLFLDLDMSDPARRAYELGFKKAKGEMKASIIESLLA
TVSKFVDAEVADFTGFSDFDLKDIGSTKTVLYVIIPVMDDTYESFINLFFSQLFDELYKLASDHGAKLPV
SVDFILDEFVNLGKFPKYEEFLATCRGYGIGVTTICQTLTQLQALYGKEKAESILGNHAVKICLNAANDV
TAKYFSDLLGKSTVKVETGSESTSRSKETSTSKSDSYSYTSRSLMTSDEIMRMPDTQSLLIFSNQRPIKA
TKAFQFKLFPGADHLVELKQNDYTSEPTGSQLTKFNEANEKWEAELAKAKATKAKNDVKPEEEEDMQDEM
DLAVAKQQASSENEDVDF

  Protein domains


Predicted by InterproScan.

(24-444)

  Protein structure



No available structure.




Host bacterium


ID   13523 GenBank   NZ_AP027296
Plasmid name   K6D_p2 Incompatibility group   -
Plasmid size   43624 bp Coordinate of oriT [Strand]   7521..7558 [+]
Host baterium   Enterococcus faecium strain K6D

Cargo genes


Drug resistance gene   erm(B), tet(L), fexB, poxtA
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -