Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 113084 |
| Name | oriT_pMS200408A_1  |
| Organism | Lactococcus formosensis strain MS200408A |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_AP027276 (8811..8947 [-], 137 nt) |
| oriT length | 137 nt |
| IRs (inverted repeats) | 21..28, 42..49 (AAAAGGGG..CCCCTTTT) |
| Location of nic site | 104..105 |
| Conserved sequence flanking the nic site |
GCTTGCAGTA |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 137 nt
>oriT_pMS200408A_1
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTGCCCCCTTTTCAAGCAACATTGTAATACAAGAACGAAGTGATTTGTATTACAATGTGATAGCTTGCAGTATTTATGGTTTTATATGGTCTATTTTGTT
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTGCCCCCTTTTCAAGCAACATTGTAATACAAGAACGAAGTGATTTGTATTACAATGTGATAGCTTGCAGTATTTATGGTTTTATATGGTCTATTTTGTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 8397 | GenBank | WP_286210857 |
| Name | Relaxase_QUD44_RS10020_pMS200408A_1 |
UniProt ID | _ |
| Length | 410 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 410 a.a. Molecular weight: 47455.93 Da Isoelectric Point: 7.3194
>WP_286210857.1 relaxase/mobilization nuclease domain-containing protein [Lactococcus formosensis]
MATIAKISNGASAASALNYALGQDRPMHEKTEQWLQDHQLERPVGLTNCRAVAVGGTNGIDPFIAKEQFD
VVRQLHNQTKESNQVLRITQSFALDELNPKVQKDWQKANDLGVELAENLYPNHQSAVYTHLDGKNHVLHN
HIIVNKVNLETGNKLREQKGESVQRAREMNDRLASRENWHILEPPKERQTETEKELIAKNEYSYMDDLRE
RINKSLQDVSVSSYETFKERLSDNGVILSERGQTFSYAFLDANNKQRRARETRLGSDFGRETILHELENR
ARQNEFSAVEQGEPAITPLERDTQQRESEIVSLEQAIEPRKSEALKRESTINRFIDTLKQLAGRVPELTQ
RVTRKLKQTKEKILDDFERRFSKDMKNYEQEQQKSLEKQANRDVQSEKKPTKDHDRGMSR
MATIAKISNGASAASALNYALGQDRPMHEKTEQWLQDHQLERPVGLTNCRAVAVGGTNGIDPFIAKEQFD
VVRQLHNQTKESNQVLRITQSFALDELNPKVQKDWQKANDLGVELAENLYPNHQSAVYTHLDGKNHVLHN
HIIVNKVNLETGNKLREQKGESVQRAREMNDRLASRENWHILEPPKERQTETEKELIAKNEYSYMDDLRE
RINKSLQDVSVSSYETFKERLSDNGVILSERGQTFSYAFLDANNKQRRARETRLGSDFGRETILHELENR
ARQNEFSAVEQGEPAITPLERDTQQRESEIVSLEQAIEPRKSEALKRESTINRFIDTLKQLAGRVPELTQ
RVTRKLKQTKEKILDDFERRFSKDMKNYEQEQQKSLEKQANRDVQSEKKPTKDHDRGMSR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 13519 | GenBank | NZ_AP027276 |
| Plasmid name | pMS200408A_1 | Incompatibility group | - |
| Plasmid size | 9314 bp | Coordinate of oriT [Strand] | 8811..8947 [-] |
| Host baterium | Lactococcus formosensis strain MS200408A |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |