Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   113070
Name   oriT_SIN2.2|unnamed7 in_silico
Organism   Bacillus mycoides strain SIN2.2
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP128134 (2543..2581 [+], 39 nt)
oriT length   39 nt
IRs (inverted repeats)      1..6, 11..16  (CTTTAC..GTAAAG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 39 nt

>oriT_SIN2.2|unnamed7
CTTTACGATAGTAAAGTATAGTGTGCTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   8388 GenBank   WP_113708655
Name   mobV_QRE63_RS29335_SIN2.2|unnamed7 insolico UniProt ID   _
Length   411 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 411 a.a.        Molecular weight: 48728.54 Da        Isoelectric Point: 9.1009

>WP_113708655.1 MULTISPECIES: MobV family relaxase [Bacillus]
MSFAICRMQKFKMRDVKGIQIHNQREKESHTNHDIESERTQLNYDLHNDGHIDYLKTVKDKIEQNVETNR
AIRKDAVVMCEFVVTSDREFFDELDMIDPAQQKVFFKEAYNFLKDRYGERNIVHAAVHLDEKTPHMHVGM
VPVTEENKLSAKQIFNRKELVSLQDDFHAHMVEKGFYLERGVSSDKKHVEIRKFKAMTAKEEIKILETDI
RQCLQKKEVVNKQMEQLESRLNQLQNAVKSTNNVDKIEVKHKGGILRSKTVEMSVEDFEELKTKAKASEA
FKRENMTLHRKNEALQASNTDLHTTVKRLEKENEELKPYKGKFERLAKLIDEMDKFYEKFVPKELPKFHE
IIGFCKRKVNASMNRFSSLRYSEERLNEHEKKGYETASKFLENQQKEQKQQRKERENERGL

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-196)


  Protein structure



No available structure.




Host bacterium

ID   13505 GenBank   NZ_CP128134
Plasmid name   SIN2.2|unnamed7 Incompatibility group   -
Plasmid size   4068 bp Coordinate of oriT [Strand]   2543..2581 [+]
Host baterium   Bacillus mycoides strain SIN2.2

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -