Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   113067
Name   oriT_DSM 15096|unnamed4 in_silico
Organism   Staphylococcus casei strain DSM 15096
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP125722 (2103..2200 [+], 98 nt)
oriT length   98 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 98 nt

>oriT_DSM 15096|unnamed4
TCAGCTGAAACTTTGAATATGAGTGTGGCTTCTTTCGTTAAGAAAAAGGCACAGGGAAGTCGATTGGTAGCGCCCAAATTGGATAAAGAGACGCGACA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   8386 GenBank   WP_069828097
Name   Relaxase_QMO72_RS13955_DSM 15096|unnamed4 insolico UniProt ID   _
Length   319 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 319 a.a.        Molecular weight: 37139.19 Da        Isoelectric Point: 7.5100

>WP_069828097.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Staphylococcus]
MATAKISSSKSTSRAINYAEKRAVEKSGLNCDVDYAKSAFKATRELYDKTGGNQGHVVIQSFKPGEVTPE
QCNQLGLELAEKIAPNHQVAIYTHEDTEHVHNHIVINSIDLDTGKKFYNNKQALKDIRQANDEVCKTHNL
SIPNVQAQIRYTQAEQNIMDKAEDVKASWKNQIRIAIEDTKEQATDFNEFNELLKPKGVEIARVTDKTIT
YRHIEEDKKVRGSKLGNDYDKEELDDGFRLEKQRRNRQSEQEIRPNFKATKGDWDEFREENERRLRSERE
RRENERINAENERLRRQREQESRTTQSVNKKDRGIDLHL

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(9-238)


  Protein structure



No available structure.




Host bacterium

ID   13502 GenBank   NZ_CP125722
Plasmid name   DSM 15096|unnamed4 Incompatibility group   -
Plasmid size   4632 bp Coordinate of oriT [Strand]   2103..2200 [+]
Host baterium   Staphylococcus casei strain DSM 15096

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -