Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   113056
Name   oriT_p_JBx_073812 in_silico
Organism   Agrobacterium sp. 33MFTa1.1
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP036360 (75272..75313 [+], 42 nt)
oriT length   42 nt
IRs (inverted repeats)      22..27, 31..36  (CGTCGC..GCGACG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 42 nt

>oriT_p_JBx_073812
GGCTCCAAGGGCGCAATTATACGTCGCGATGCGACGCGTTGC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   8379 GenBank   WP_034499339
Name   traA_EYD00_RS23700_p_JBx_073812 insolico UniProt ID   _
Length   1100 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 1100 a.a.        Molecular weight: 123561.13 Da        Isoelectric Point: 9.8127

>WP_034499339.1 Ti-type conjugative transfer relaxase TraA [Agrobacterium sp. 33MFTa1.1]
MAIAHFSASIVSRGSGRSVVLSAAYRHCAKVEYEREARTIDYTRKQGLLHEEFVLPAGAPKWARSLIADR
SVSGASEAFWNNVEAFEKRADAQLARDLTIALPLELSMEQNIALVRDFVDKHILAKGMVADWVYHDNPGN
PHIHLMTTLRPLTEDGFGSKKVAIISDDGQPVRTKSGKILYELWAGSTDDFNMLRDGWFERLNHHLALGG
IDLRVDGRSYEKQGIDLEPTIHLGVRAKAIERKAERQGVRPELERIELNERRRTENARRILKNPAIVLDL
ITREKSVFNERDVAKVLYRYIDDPAVFQQLMIRIILNPDVLRLERDTIDFATGEKLPARYSTRAMIRLEA
TMARQAMWLSAKKAHAVSEAVLDVTFRRHERLSDEQKAAIERIAGPARIAAVVGRAGAGKTTMMKAASEA
WELAGYRVVGGALAGKAAEGLEKEAGIQSRTLASWELRWERGRDVLDDKTTFVMDEAGMVASKQMAGFVD
SVVRTGAKIVLVGDPEQLQPIEAGAAFRVIVDRIGYAELETIYRQRDDWMRKASLDLARGNVEKALVAYE
GQGRVLGSRLKFEAVERLIADWNRDYDQTKTTLILAHLRRDVRMLNVMAREKLVERGIVGGGHVFKTADG
ERRFDVGDQIVFLKNEGSLGVKNGMIGHVVEAQPNRIVALVGERDHRRQVIVEQRFYNNLDHGYATTIHK
SQGATVDRVKVLASLSMDRHLTYVAMTRHREDLQLYYGTRSFSFNGGLAKVLSRRQAKETTLEYERGQLY
REALRFAETRGLHIVQVARTLVRDRLDWTLRQKAKLVDLGQRLSAFAARLGFTESPDTQTMKEAAPMVAG
IKTFSGTVADTVGDKLGEDPGLKRQWEEVSARFRYVFADPETAFRAMNFDVVIADKDAARQTLETLETNA
ASIGPLKGKSGILASKAEREARSVAEVNVPALKRDLDKYLRMREAAAQHIAADEQALRHQVSIDIPALSP
AARVVLERVRDAIDRNDLPAAMAYALSNRETKLEIDGFNRAVTERFGERTLLSNAAQEPSGALYEKLSEG
MKPEQKEQLKQAWPVMRTAQQLAAHERTVQSLRQAEEHRLMQRQTPVLKQ

  Protein domains


Predicted by InterproScan.

AAA domain (AAA_30)

(382-565)

MobA/MobL family (MobA_MobL)

(17-243)

Viral (Superfamily 1) RNA helicase (Viral_helicase1)

(692-736)

BID domain of Bartonella effector protein (Bep) (Bep_C_terminal)

(855-951)


  Protein structure



No available structure.




Host bacterium

ID   13491 GenBank   NZ_CP036360
Plasmid name   p_JBx_073812 Incompatibility group   -
Plasmid size   496948 bp Coordinate of oriT [Strand]   75272..75313 [+]
Host baterium   Agrobacterium sp. 33MFTa1.1

Cargo genes

Drug resistance gene   -
Virulence gene   htpB
Metal resistance gene   arsC
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -