Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   112897
Name   oriT_pPM4 in_silico
Organism   Bacillus badius strain NBPM-293
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP082368 (1838..1876 [+], 39 nt)
oriT length   39 nt
IRs (inverted repeats)      1..6, 11..16  (CTTTAC..GTAAAG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 39 nt

>oriT_pPM4
CTTTACGTATGTAAAGTATAGTGTGATATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   8300 GenBank   WP_041102163
Name   mobV_K7T73_RS21895_pPM4 insolico UniProt ID   _
Length   402 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 402 a.a.        Molecular weight: 47893.71 Da        Isoelectric Point: 9.8904

>WP_041102163.1 MobV family relaxase [Bacillus badius]
MSYAVVHMEKMKAYDLKGMQFHHQRERESRTNPDIDKKRSCENYDLVNEDPIDFNQRVKEIIESQKTGTR
KTRKDAVLVNELLVTSDREFFNRLDPDETRKFFEDSLAFFQERYGKQNIAYAVVHMDEKTPHMHMGVVPM
RDGRLQSKNVFNRQELLWLQDKFPEHMQKMGFELERGEKGFDREHLSVQDFKRKTAKEQLEKEIASLEKK
LSGKKNELLILNEEISDEVQVSAKREMKKVEVKTEERNLFGLPKKEIRKQPTGNIFMPEKEFKQLVAAAR
DNKQLKSRMEKILRMDLAKENQKLASQLNGTLKNLKEKEKENQRLSEENYSLRSQNHELRQEIHFLYQST
KEFLKEITEDVRAFKNAFKDFVGKVKEKVTGSEFEKTYKREVKKEKNRGMER

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-192)


  Protein structure



No available structure.




Host bacterium

ID   13332 GenBank   NZ_CP082368
Plasmid name   pPM4 Incompatibility group   -
Plasmid size   3841 bp Coordinate of oriT [Strand]   1838..1876 [+]
Host baterium   Bacillus badius strain NBPM-293

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -