Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 112331 |
| Name | oriT_pl_17-21  |
| Organism | Staphylococcus aureus strain 17-21 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP126628 (797..985 [+], 189 nt) |
| oriT length | 189 nt |
| IRs (inverted repeats) | 163..168, 178..183 (ATTTTA..TAAAAT) 117..123, 130..136 (TCCCCAT..ATGGGGA) 100..106, 110..116 (ATCTGGC..GCCAGAT) 31..39, 44..52 (AGTGTCACA..TGTGACACT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 189 nt
>oriT_pl_17-21
TGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAACTGTGACACTTGAGCTTTTTATAACCCCACACAAAAACATTTTCGAAGCCTTGAAATATCTGGCTTTGCCAGATTCCCCATTCATTGATGGGGACAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAA
TGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAACTGTGACACTTGAGCTTTTTATAACCCCACACAAAAACATTTTCGAAGCCTTGAAATATCTGGCTTTGCCAGATTCCCCATTCATTGATGGGGACAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 7975 | GenBank | WP_194381688 |
| Name | Replic_Relax_QPR40_RS13770_pl_17-21 |
UniProt ID | _ |
| Length | 286 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 286 a.a. Molecular weight: 33983.57 Da Isoelectric Point: 6.2584
>WP_194381688.1 replication-relaxation family protein [Staphylococcus aureus]
MSYTTLNEKDFKLFSFLEAHIYLTIEQIRTAIYLNDDGSMKSEKSVWNRLTKLEEDGYITKFKAQATLQA
KRPNSIYCLTKTGSMFLESMQGYTHFKSVYEKNLPMWYMHQLAVNDVVLSYERHKIPAVDLLEYANEQRT
TFQYNDGREDVIRPDGAILLERQDGYVIGIMLEVERSKKARKFTYDKLVRYKDFFNQSNNTMKRFHIHAG
FEEFVDEWRLLFVSNEDENYRKLKRDFKTVDFEDAFKGQNSFDVMIAKLDDVMTNPYGAIYNYFKPGVDF
DEFRTL
MSYTTLNEKDFKLFSFLEAHIYLTIEQIRTAIYLNDDGSMKSEKSVWNRLTKLEEDGYITKFKAQATLQA
KRPNSIYCLTKTGSMFLESMQGYTHFKSVYEKNLPMWYMHQLAVNDVVLSYERHKIPAVDLLEYANEQRT
TFQYNDGREDVIRPDGAILLERQDGYVIGIMLEVERSKKARKFTYDKLVRYKDFFNQSNNTMKRFHIHAG
FEEFVDEWRLLFVSNEDENYRKLKRDFKTVDFEDAFKGQNSFDVMIAKLDDVMTNPYGAIYNYFKPGVDF
DEFRTL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 12766 | GenBank | NZ_CP126628 |
| Plasmid name | pl_17-21 | Incompatibility group | - |
| Plasmid size | 67725 bp | Coordinate of oriT [Strand] | 797..985 [+] |
| Host baterium | Staphylococcus aureus strain 17-21 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |