Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 111914 |
| Name | oriT_p01KUH140013  |
| Organism | Staphylococcus aureus strain KUH140013 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_AP020312 (1177..1411 [+], 235 nt) |
| oriT length | 235 nt |
| IRs (inverted repeats) | 166..172, 179..185 (TCCCCAT..ATGGGGA) 149..155, 159..165 (ATCTGGC..GCCAGAT) 107..114, 121..128 (TTTTTATG..CATAAAAA) 82..88, 93..99 (TGTCACA..TGTGACA) 24..31, 43..50 (CTTTTTTA..TAAAAAAG) 36..41, 44..49 (TTTTTT..AAAAAA) 1..7, 20..26 (AAGACAT..ATGTCTT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 235 nt
>oriT_p01KUH140013
AAGACATTAGTGATGACTGATGTCTTTTTTATTGATTTTTTGTAAAAAAGTACTGTCTTATTTTTGTGACACAATATATTGTGTCACAAAAGTGTGACATTGGAGCTTTTTATGACCCCACATAAAAACATCTCGGATGTCTTGAAATATCTGGCTTTGCCAGATTCCCCATTCGTTGATGGGGACAAATTCCTCTTATGCTCTTACGGAGTTTTTAGGGATAAATTAAAATTTC
AAGACATTAGTGATGACTGATGTCTTTTTTATTGATTTTTTGTAAAAAAGTACTGTCTTATTTTTGTGACACAATATATTGTGTCACAAAAGTGTGACATTGGAGCTTTTTATGACCCCACATAAAAACATCTCGGATGTCTTGAAATATCTGGCTTTGCCAGATTCCCCATTCGTTGATGGGGACAAATTCCTCTTATGCTCTTACGGAGTTTTTAGGGATAAATTAAAATTTC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 12349 | GenBank | NZ_AP020312 |
| Plasmid name | p01KUH140013 | Incompatibility group | - |
| Plasmid size | 32574 bp | Coordinate of oriT [Strand] | 1177..1411 [+] |
| Host baterium | Staphylococcus aureus strain KUH140013 |
Cargo genes
| Drug resistance gene | qacB |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | AcrIIA21 |