Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 111889 |
| Name | oriT_pSFyv  |
| Organism | Shigella flexneri |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NC_021922 (4182..4241 [-], 60 nt) |
| oriT length | 60 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_pSFyv
GGGTTTCGGGGCGCAGCCCTAAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGACTTA
GGGTTTCGGGGCGCAGCCCTAAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGACTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 12324 | GenBank | NC_021922 |
| Plasmid name | pSFyv | Incompatibility group | Col440I |
| Plasmid size | 6852 bp | Coordinate of oriT [Strand] | 4182..4241 [-] |
| Host baterium | Shigella flexneri |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |