Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 111884 |
| Name | oriT_pYUSHP29-5  |
| Organism | Leclercia adecarboxylata strain SH19PE29 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP087285 (1091..1149 [+], 59 nt) |
| oriT length | 59 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 59 nt
>oriT_pYUSHP29-5
GGTTTCGGGGCGCAGCCCTGAACCAGTCACGCAGCGCTAGCGGAGTGTATACTGGCTTA
GGTTTCGGGGCGCAGCCCTGAACCAGTCACGCAGCGCTAGCGGAGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 7695 | GenBank | WP_230431600 |
| Name | Relaxase_LO739_RS24560_pYUSHP29-5 |
UniProt ID | _ |
| Length | 499 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 499 a.a. Molecular weight: 54579.84 Da Isoelectric Point: 9.0444
>WP_230431600.1 relaxase/mobilization nuclease domain-containing protein [Leclercia adecarboxylata]
MIVKFHPRGRGGGAGPVDYLLGKDRQREGASVLQGRPEEVRELIDASPYAKKYTSGVLSFAEADLPPGQR
EKLMASFERVLMPGLDKDQYSVLWVEHTDKGRLELNFLIPNTELLTGKRLQPYFDRADRPRIDAWQTVVN
GRLGLHDPNAPENRRALVTASALPETKQEAAQAITQGLLALASSGELKTRQDVTAALESAGFEVVRTTRS
SISIADPDGGRNIRLKGAIYEQSFNAGEGLGAEIESAAAAYRRDAESRIQRARAVCQSGTERKREENQRR
HPRPRGGHERGHGEEPAERAAVGRPDMALRPDDGGPAYRDMRGHSVVAGPADPRQLHGPSPAGGRPEENA
HPDVGRALSGGGRRPEVHYPAPGNEARNNPLQGNDLDPPETGVAEHDRAGKAVAERIRAATGGLLAKAGR
MGERLRGMAEDVWAYATGEREAERTRDGLERAGAEFERTAAPLVRELTAAERRQREHEYQKTLELQRQPQ
KTYKGPTLG
MIVKFHPRGRGGGAGPVDYLLGKDRQREGASVLQGRPEEVRELIDASPYAKKYTSGVLSFAEADLPPGQR
EKLMASFERVLMPGLDKDQYSVLWVEHTDKGRLELNFLIPNTELLTGKRLQPYFDRADRPRIDAWQTVVN
GRLGLHDPNAPENRRALVTASALPETKQEAAQAITQGLLALASSGELKTRQDVTAALESAGFEVVRTTRS
SISIADPDGGRNIRLKGAIYEQSFNAGEGLGAEIESAAAAYRRDAESRIQRARAVCQSGTERKREENQRR
HPRPRGGHERGHGEEPAERAAVGRPDMALRPDDGGPAYRDMRGHSVVAGPADPRQLHGPSPAGGRPEENA
HPDVGRALSGGGRRPEVHYPAPGNEARNNPLQGNDLDPPETGVAEHDRAGKAVAERIRAATGGLLAKAGR
MGERLRGMAEDVWAYATGEREAERTRDGLERAGAEFERTAAPLVRELTAAERRQREHEYQKTLELQRQPQ
KTYKGPTLG
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Auxiliary protein
| ID | 4178 | GenBank | WP_200143060 |
| Name | WP_200143060_pYUSHP29-5 |
UniProt ID | _ |
| Length | 107 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 107 a.a. Molecular weight: 11792.55 Da Isoelectric Point: 8.5632
>WP_200143060.1 MobC family plasmid mobilization relaxosome protein [Leclercia adecarboxylata]
MLTMWVTEDEHRRLLERCDGKQLASWMRQTCLGEKPARAGKLPSISPALLRQLASMGNNLNQIARRVNAG
GGSGQDRLQIVAALMAIDAGLEQLRHAVLEKGSEDDR
MLTMWVTEDEHRRLLERCDGKQLASWMRQTCLGEKPARAGKLPSISPALLRQLASMGNNLNQIARRVNAG
GGSGQDRLQIVAALMAIDAGLEQLRHAVLEKGSEDDR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 12319 | GenBank | NZ_CP087285 |
| Plasmid name | pYUSHP29-5 | Incompatibility group | Col440II |
| Plasmid size | 5234 bp | Coordinate of oriT [Strand] | 1091..1149 [+] |
| Host baterium | Leclercia adecarboxylata strain SH19PE29 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |