Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   111817
Name   oriT_CQ16Z11|unnamed5 in_silico
Organism   Companilactobacillus futsaii strain CQ16Z11
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP064865 (2023..2047 [+], 25 nt)
oriT length   25 nt
IRs (inverted repeats)      1..9, 16..24  (TAAAGTATA..TATACTTTA)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 25 nt

>oriT_CQ16Z11|unnamed5
TAAAGTATAGTGGGTTATACTTTAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   7660 GenBank   WP_195702125
Name   mobV_ITJ83_RS13265_CQ16Z11|unnamed5 insolico UniProt ID   _
Length   361 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 361 a.a.        Molecular weight: 41902.23 Da        Isoelectric Point: 8.3202

>WP_195702125.1 MULTISPECIES: MobV family relaxase [Lactobacillaceae]
MSFAVARMTKLKADNLVGIGNHDQRKTTNHSNEDIDVSRSHLNYDLVAGRTDNFKTDIEAYINENKASKR
AVRKDAVLVNEWIITSDKDFFEQLDEADTRKYFETAKQYFADNYGDENIRYAVVHLDEKTPHMHMGIVPF
DDDKKLSAKRIFNREALQRIQEELPQYLKEHGFDVERGNKNKERKNLSVPEYKAMREDLKKIETEKQETQ
AKLADTKKQLDEIKPRDTKKIASKPTLMNKNKVTVDKSDLADLEQRAVTSDAYNFEKIHLEVENHSLRND
LSEAKGRNYELKKENERLQKLVGTLQGIIRNVDEFLHKKLGINLPEKWLERAGLKEPSKKAPKSSQELDR
HKSDELGGLHL

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-194)


  Protein structure



No available structure.




Host bacterium

ID   12252 GenBank   NZ_CP064865
Plasmid name   CQ16Z11|unnamed5 Incompatibility group   -
Plasmid size   3699 bp Coordinate of oriT [Strand]   2023..2047 [+]
Host baterium   Companilactobacillus futsaii strain CQ16Z11

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -