Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 111604 |
| Name | oriT_pSauR142-2  |
| Organism | Staphylococcus aureus strain SauR142 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_JAHMGV010000048 (2875..3050 [-], 176 nt) |
| oriT length | 176 nt |
| IRs (inverted repeats) | 136..143, 148..155 (CTATCATT..AATGATAG) 119..125, 129..135 (GTCTGGC..GCCAGAC) 51..58, 63..70 (GTGTCACA..TGTGACAC) 20..26, 31..37 (TGTCACA..TGTGACA) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 176 nt
>oriT_pSauR142-2
TGACAAATGCTGTATGTAGTGTCACAAAACTGTGACAAACGCAATATATTGTGTCACAAAAGTGTGACACTACAGCTTTTTATGATATCACTTTAAAATTACTTAAAACCCTTGGAATGTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTA
TGACAAATGCTGTATGTAGTGTCACAAAACTGTGACAAACGCAATATATTGTGTCACAAAAGTGTGACACTACAGCTTTTTATGATATCACTTTAAAATTACTTAAAACCCTTGGAATGTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 12039 | GenBank | NZ_JAHMGV010000048 |
| Plasmid name | pSauR142-2 | Incompatibility group | - |
| Plasmid size | 3050 bp | Coordinate of oriT [Strand] | 2875..3050 [-] |
| Host baterium | Staphylococcus aureus strain SauR142 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |