Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 111507 |
| Name | oriT_pSFxv_5  |
| Organism | Shigella flexneri 2002017 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NC_017330 (612..897 [+], 286 nt) |
| oriT length | 286 nt |
| IRs (inverted repeats) | 247..252, 255..260 (CGCCCC..GGGGCG) 130..138, 148..156 (GCGGTGTTG..CAACACCGC) 31..38, 41..48 (GCAAAAAC..GTTTTTGC) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 286 nt
>oriT_pSFxv_5
GTTCTCATGCCTGAAATGCCCACACCCCACGCAAAAACAAGTTTTTGCTGATTTTTCTTTATAAATAGAGAGTTATGACAAATTAGTTCTTCTTGCTCTCTTTGTGATATTTAAAAAAGCGGTGTCGGCGCGGTGTTGTAGCTGCGCCAACACCGCTTTTTAGGGGTGGTACTGACTATTTTCATAAAAAAAACATTATCTTATATTAGGGGTGCTGCTAGCGGCGCGGTGTGTTTTTTTACAGGACGCCCCTGGGGGCGCTGCTAGGGGTGTCTGTTCAGATATG
GTTCTCATGCCTGAAATGCCCACACCCCACGCAAAAACAAGTTTTTGCTGATTTTTCTTTATAAATAGAGAGTTATGACAAATTAGTTCTTCTTGCTCTCTTTGTGATATTTAAAAAAGCGGTGTCGGCGCGGTGTTGTAGCTGCGCCAACACCGCTTTTTAGGGGTGGTACTGACTATTTTCATAAAAAAAACATTATCTTATATTAGGGGTGCTGCTAGCGGCGCGGTGTGTTTTTTTACAGGACGCCCCTGGGGGCGCTGCTAGGGGTGTCTGTTCAGATATG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 11942 | GenBank | NC_017330 |
| Plasmid name | pSFxv_5 | Incompatibility group | ColRNAI |
| Plasmid size | 3180 bp | Coordinate of oriT [Strand] | 612..897 [+] |
| Host baterium | Shigella flexneri 2002017 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |