Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   111378
Name   oriT_pGB2002 in_silico
Organism   Streptococcus agalactiae
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NC_015971 (1010..1047 [-], 38 nt)
oriT length   38 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 38 nt

>oriT_pGB2002
CACATTTACGAAGTAAAGTATAATGCGTTATACTTTAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   7423 GenBank   WP_014072567
Name   mobV_HS760_RS00035_pGB2002 insolico UniProt ID   G3ER43
Length   500 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 500 a.a.        Molecular weight: 58463.75 Da        Isoelectric Point: 6.0256

>WP_014072567.1 MULTISPECIES: MobV family relaxase [Streptococcus]
MSYLVARMQKMKVGNLGGAYRHNERVFENHSNKDIDTSRSHLNYELTDRDRSVSYEKQIKDYVNEKKSSK
RAIRKDAVLCDEWIITSDKDFFERLDQEQTRAFFETAKNYFAERYGLENIAYASVHLDESTPHMHMGVVP
MVDGKLSSKAVFTREELKAIQEELPKYMNEQGFELSRGQLGSDKKHLSVADYKAKIGKEALNKELLGLGA
PRYWHKEEDRPATAEEIAGYESLASLFAGEEMKLREATLEERFTWLDSHRNDLKGDLSHLEELVDKKIEE
YTRIDSEASERLSELSELNSKVKDREKELRGLESDSERLSDKVVRLEKEHRETTQLLVEQNRNLRKISFQ
DLDRRRIAEDLHEELEKATPKLFGGSFNFTADFVGRLKTFMSEVVEKLEQVINQNEVLRKALEGMKQAKE
RAERELLQEEWKTQRLETENQNLRQENKELKVSKNLLEDIQEVITEKEVSSLNKRLDELREARMASKRGY
EPKRSKGRSI

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-194)


  Protein structure


Source ID Structure
AlphaFold DB G3ER43


Host bacterium

ID   11813 GenBank   NC_015971
Plasmid name   pGB2002 Incompatibility group   -
Plasmid size   6825 bp Coordinate of oriT [Strand]   1010..1047 [-]
Host baterium   Streptococcus agalactiae

Cargo genes

Drug resistance gene   erm(T)
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -