Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   111276
Name   oriT_L1|p6 in_silico
Organism   Lacticaseibacillus paracasei strain L1
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP080342 (2528..2547 [-], 20 nt)
oriT length   20 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 20 nt

>oriT_L1|p6
GTTGTGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   7358 GenBank   WP_259912537
Name   mobQ_KZR06_RS16495_L1|p6 insolico UniProt ID   _
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80541.97 Da        Isoelectric Point: 9.2829

>WP_259912537.1 MobQ family relaxase [Lacticaseibacillus paracasei]
MAIFHMSFGNISAGKGRSAIAGASYRSGEKLFDQKEGRSYFYARSVMPESFILTPKNAPEWASDREKLWN
EVERKDRRANSRYAKEFNVALPVELSEDEQKELLTKYVQENFVDEGMVADVAIHRDHPDNPHAHVMLTNR
PFNPDGTWGLKSKRENILDENGNKTYTENSRFPRSRKVWLVDWDKKEKITEWRHNWAVSVNQVLEQKNIP
DRISEKSFIEQGIDDTPTQHEGINSKRHERKEFNQQVKNYRKAKASYKNNQEKVINRGHLDSLSKHFSFN
EKRVVNELSHELKTYISLESLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKKADELLNKVV
DRTTKKLYPELNFEQTTQAERRELIKETDSEQTVFKGSELNERLMNIRDDLLTQQLLTFTKRPYVGWKLL
MQQEKEVKIELKYTLMIHDDNLESLEHVDQGLLEKYSPTEQQKITRAVKDLRAIMAVKQVIKTQYHEVLK
RAFPKGDLDGLPLIKQEQAYTAVMYYDPVLKPCQAETIEQWQANPPQVFSPQEHQQGLAYLSGQLSLDRL
ENHHLQRVLKHDGTKQLFLGECKVDPTIKNSQIEKIQKQLKGQQAKDDQYRKANIGHYQPLNYKPVSPDY
YLKTAFSNAIMTALYARDEDYQRQKQAQGLKETEWEMTKKQRQHQTRNRHEDGGMHL

  Protein domains


Predicted by InterproScan.

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-384)

MobA/MobL family (MobA_MobL)

(17-241)


  Protein structure



No available structure.




Host bacterium

ID   11711 GenBank   NZ_CP080342
Plasmid name   L1|p6 Incompatibility group   -
Plasmid size   17723 bp Coordinate of oriT [Strand]   2528..2547 [-]
Host baterium   Lacticaseibacillus paracasei strain L1

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA21