Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   111269
Name   oriT_pSAL4261-4 in_silico
Organism   Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4261
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_AP023298 (3196..3373 [-], 178 nt)
oriT length   178 nt
IRs (inverted repeats)      104..109, 123..128  (ACAATC..GATTGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 178 nt

>oriT_pSAL4261-4
GATGTAACTCCGTGCGCGATGAAAAATCGCATTTTAGCGCGTCACTGGTAGTTTAAAAACTGAGCTGGCATAATGCACGGCAAATCACGAAGTGCGCACTTATACAATCTCCACTCCGTTTCGATTGTGTGCGCCCTGCGGGGCTGAAAGAAAACCACAAAAAGGCATTACGGCAGAA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   7356 GenBank   WP_015059934
Name   mobQ_K5635_RS24300_pSAL4261-4 insolico UniProt ID   A0A8D4Z8A2
Length   715 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 715 a.a.        Molecular weight: 81112.57 Da        Isoelectric Point: 8.8012

>WP_015059934.1 MULTISPECIES: MobQ family relaxase [Enterobacteriaceae]
MAIYHLSMKIISRNSGYSAVASAAYRSGSLMLDERTGLTHDYTRKSGVAEAVILTPATAPAWCTNRAELW
NAVEKAERRKNSQLAREIELAIPHELPQDAARETVLAFVRENFVSQGMIADVAFHHMDKTNPHAHIMLTT
RAVGPAGFGGKVRDWNDRTHAETWRASWADHANRALANAGYQEEIDHRSYERQGLEKTPGIHLGKSACAM
ETRGIETERGEQNRLINRLNLEIQISRTELRNGGLTEPARRVADLLNIGLPDNATSYTLRDIIEALPKDS
NSAWKLTSNAMSMMADMQATRRRWEELNTERKVAMSHAASLKKSSPFSSGFSRIPLMQWAAPEYRSEQGK
IQSLSQQMEKLRQHYRKVEKQDIPASQMAFEKQWQKWGESGLAALRAQLLKREEELRRKEQEDTERSRAE
QLRKNDNAVMDSGVLSAVVTGYGEAPMPGNGEMTCYLLLHNRNGEYTLWGNELEKYRARIFERVDLMRDR
SGYICDRSEIGQRPPLQRVYSSATFEQLLTQVCQTWPQHTRNLRQPKTWPESFCLGEDRQPAMPSLAARK
VDFTQGRLPPTLMPVMSSVDRETRQLQLLLVMGVDDSLGGVVRLNGTLYPAFAVPSADNSQLVISALTDK
GLRYAGYGVAVNHDADSHISPAPELMQFHLKTREAPLFAAVNTPEKQPDHLFRSLGFNRTWDEWRREEDA
RTHATVRRHDRGWSQ

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(18-213)


  Protein structure



No available structure.




Host bacterium

ID   11704 GenBank   NZ_AP023298
Plasmid name   pSAL4261-4 Incompatibility group   Col8282
Plasmid size   4060 bp Coordinate of oriT [Strand]   3196..3373 [-]
Host baterium   Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4261

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -