Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 111074 |
| Name | oriT_pR18.0292_5.9k  |
| Organism | Salmonella enterica subsp. enterica serovar Typhimurium strain R18.0292 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP100742 (1..54 [-], 54 nt) |
| oriT length | 54 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 54 nt
>oriT_pR18.0292_5.9k
GGGTGTCGGGGCGCAGCCATGACCCAGTCACGTAGCGATAGCGGAGTGTATACT
GGGTGTCGGGGCGCAGCCATGACCCAGTCACGTAGCGATAGCGGAGTGTATACT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 11509 | GenBank | NZ_CP100742 |
| Plasmid name | pR18.0292_5.9k | Incompatibility group | ColRNAI |
| Plasmid size | 5892 bp | Coordinate of oriT [Strand] | 1..54 [-] |
| Host baterium | Salmonella enterica subsp. enterica serovar Typhimurium strain R18.0292 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |