Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   111037
Name   oriT_pCS17-B in_silico
Organism   Streptococcus thermophilus strain CS17
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_MF807213 (560..609 [+], 50 nt)
oriT length   50 nt
IRs (inverted repeats)     _
Location of nic site      34..35
Conserved sequence flanking the
  nic site    		  GCTTGCAAAA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 50 nt

>oriT_pCS17-B
AATATCGCAACATGGTACCATGTTGCTCCGCTTGCAAAAAGAAAGCCTAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   7257 GenBank   WP_002360721
Name   mobV_HTO59_RS00030_pCS17-B insolico UniProt ID   A0A2H5CQ73
Length   586 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 586 a.a.        Molecular weight: 68087.93 Da        Isoelectric Point: 8.8137

>WP_002360721.1 MULTISPECIES: MobV family relaxase [Lactobacillales]
MRYTLLGSTAEIQRHRTTQEKKGGGALMSKIVARMEKMKDGNLSGIQRHNQRETNNHSNPDIDIEKSHLN
YDLVNPGSINYREKIKQIIESQRISKRAVRKDAVLVNEWIITSDTAFFQENTDTQAFFTDVVAYFSDRCG
RQNVAYATVHLDETTPHMHLGIVPMYEGRLSSKQVFSRQNLLEIQEELPTYLQERGYAIERGLRGSPQKH
LSVKEYKDVQKELQVSKQELANQEQILAEKERELHSYEQAIFRIDRLLEEKNEEVKGKVQAMNQLETKRN
EIINSLQTTVLPDLANVKEKKFSLNGLKYVLSASDFSAIKSITKDFETLRTQNKHLKIENNNLAQKNKEL
TQVNHEQELQITELAYELTLKKEQLTAFEEKQLNYDQSEQIKQELDTTTQTVSVLETENKRLKDKITDLT
YDFSELNEKYQEIKLKFDGLTTYLHERLGHAKETILFTIQQGVKYLQNAPKLKKSLERYSKDRTYLIDEK
GTLFLPPDTGSKGVTMSLNPHFYPLKAPFYNRETGCYEFVGEYMANGRSRTNTLQLSEEQVLEKKAFTFE
QSTDKKAWQQSKKYSRDMSKGRGLSR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(29-218)


  Protein structure


Source ID Structure
AlphaFold DB A0A2H5CQ73


Host bacterium

ID   11472 GenBank   NZ_MF807213
Plasmid name   pCS17-B Incompatibility group   -
Plasmid size   5143 bp Coordinate of oriT [Strand]   560..609 [+]
Host baterium   Streptococcus thermophilus strain CS17

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -