Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 110967 |
| Name | oriT_S1_VPH_Chula|unnamed3  |
| Organism | Salmonella enterica strain S1_VPH_Chula |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP121418 (2945..3004 [-], 60 nt) |
| oriT length | 60 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_S1_VPH_Chula|unnamed3
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 7223 | GenBank | WP_272734401 |
| Name | Relaxase_QAT86_RS24870_S1_VPH_Chula|unnamed3 |
UniProt ID | _ |
| Length | 195 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 195 a.a. Molecular weight: 21785.72 Da Isoelectric Point: 9.2479
>WP_272734401.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein, partial [Enterobacteriaceae]
MIVKFHPRGRGGGGGPVDYLLGKDRQRDGASVLQGKPEEVRELIDASPYAKKYTSGVLSFAEQDLPPGQR
EKLMASFERVLMPGLDKDQYSVLWVEHRDKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSALPEAKQEAAQAITRGLLSLASSGELKTRQDVTE
MIVKFHPRGRGGGGGPVDYLLGKDRQRDGASVLQGKPEEVRELIDASPYAKKYTSGVLSFAEQDLPPGQR
EKLMASFERVLMPGLDKDQYSVLWVEHRDKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSALPEAKQEAAQAITRGLLSLASSGELKTRQDVTE
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Auxiliary protein
| ID | 4024 | GenBank | WP_061390563 |
| Name | WP_061390563_S1_VPH_Chula|unnamed3 |
UniProt ID | A0A614F2D2 |
| Length | 161 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 161 a.a. Molecular weight: 18016.61 Da Isoelectric Point: 9.1803
>WP_061390563.1 MULTISPECIES: MbeB family mobilization protein [Bacteria]
MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESEKRISAAILDHDRKLSSAMSQRTKGM
LRMISQTWLTIVLVSALLIASSAGILWWQGQQILDNYTTIQEQKSTQAMLSEKNNGVQLTTCGEERRRCV
RVNPEAGRFGEDSSWMILAGK
MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESEKRISAAILDHDRKLSSAMSQRTKGM
LRMISQTWLTIVLVSALLIASSAGILWWQGQQILDNYTTIQEQKSTQAMLSEKNNGVQLTTCGEERRRCV
RVNPEAGRFGEDSSWMILAGK
Protein domains
Predicted by InterproScan.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A614F2D2 |
| ID | 4025 | GenBank | WP_024191642 |
| Name | WP_024191642_S1_VPH_Chula|unnamed3 |
UniProt ID | _ |
| Length | 107 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 107 a.a. Molecular weight: 11839.65 Da Isoelectric Point: 7.8963
>WP_024191642.1 MULTISPECIES: MobC family plasmid mobilization relaxosome protein [Bacteria]
MLTMWVTEDEHRRLLERCEGKQLAAWMRQICLDEKPSRAGKLPSISPALLRQLAGMGNNLNQIARQVNAG
GGTGHDRVQVVAVLMAIDAGLERLRHAVLEKGADDDR
MLTMWVTEDEHRRLLERCEGKQLAAWMRQICLDEKPSRAGKLPSISPALLRQLAGMGNNLNQIARQVNAG
GGTGHDRVQVVAVLMAIDAGLERLRHAVLEKGADDDR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 11402 | GenBank | NZ_CP121418 |
| Plasmid name | S1_VPH_Chula|unnamed3 | Incompatibility group | ColRNAI |
| Plasmid size | 4018 bp | Coordinate of oriT [Strand] | 2945..3004 [-] |
| Host baterium | Salmonella enterica strain S1_VPH_Chula |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |