Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 109987
• Name: oriT_Cuernavaca_S4|unnamed4
• Organism: Bacillus toyonensis strain Cuernavaca_S4
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP126516 (1888..1926 [-], 39 nt)
• oriT length: 39 nt
• IRs (inverted repeats): 1..6, 11..16 (CTTTAC..GTAAAG)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 39 nt

>oriT_Cuernavaca_S4|unnamed4
CTTTACGATAGTAAAGTATAGTGTGCTATACTTTACATG

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_QPL81_RS00015_Cuernavaca_S4|unnamed4

• ID: 6594
• GenBank: WP_284556675
• Name: mobV_QPL81_RS00015_Cuernavaca_S4|unnamed4
• UniProt ID: _
• Length: 408 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 408 a.a.
• Molecular weight: 48381.31 Da
• Isoelectric Point: 9.3336

>WP_284556675.1 MobV family relaxase [Bacillus toyonensis]
MSYAICRMQKFKMRDVKGIQIHNQREKESHTNHDIESERTHLNYDLHNDGHIDYLKTVKDKIEQNVETNR
AIRKDAVVMCEFVVTSDREFFDVLDMINPAQQKVFFKEAYRFLKDRYGEKNIVHAAVHLDEKTPHMHVGM
VPVTEENKLSAKQIFNRKELVSLQDDFHAHMVEKGFYLERGVSSDKKHVEMRKFKAMTAKEEIKALETEM
GQCLQKKETVNKQMRQLESRLNQLQNAVDSTNEVDKMEVKHKGGLLRSKTVEMSVEDFEELKTKAKASEG
FKRENMTLHRKNEALQASNTDLHTTVKRLEKENEELKPYKEKFTRLEKLVSRMQEFYQKHYPKEVKKFEY
VMGYCKKKVNATMNMFSSHLFKKENMSQHEKEGYAIAENEIKIARQNRKKENDIDFER

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-196)

Protein structure

No available structure.

Host bacterium

• ID: 10422
• GenBank: NZ_CP126516
• Plasmid name: Cuernavaca_S4|unnamed4
• Incompatibility group: -
• Plasmid size: 3330 bp
• Coordinate of oriT [Strand]: 1888..1926 [-]
• Host baterium: Bacillus toyonensis strain Cuernavaca_S4

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -