Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   109780
Name   oriT_YZ30|unnamed1 in_silico
Organism   Leclercia adecarboxylata strain YZ30
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP068235 (7978..8062 [-], 85 nt)
oriT length   85 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 85 nt

>oriT_YZ30|unnamed1
GGGTGTCGGGGCGGAGCCCTGACCAGGTGGTGTTTGTAATATCGTGCGTGCGCGGTATTACAAACACACATCCTGTCCCGTCTTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   6475 GenBank   WP_284454591
Name   Relaxase_JJN11_RS23535_YZ30|unnamed1 insolico UniProt ID   _
Length   900 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 900 a.a.        Molecular weight: 102940.97 Da        Isoelectric Point: 8.6000

>WP_284454591.1 relaxase/mobilization nuclease domain-containing protein [Leclercia adecarboxylata]
MIPVIPKKRKDGKSSFGDLVSYVSVRDEPQDDDLMEAVRASGTKADMPHSSRFSRLVDYATKLRDESFIS
LVDVMPDGGEWVNFYGVTCFHNCSSIESAAEEMEFTARKAKFARSKSDPVFHYILSWQSHESPRPEQIYD
SVRHSLSRLGLSGHQFVSAVHNDTDNLHVHVAVNRVHPETGYLNWLSYSQEKLSKACRELELKHGFSPDN
GCYVLAPDNRIVRRTSVERDRQSAWLHGRKPSLKEYIADTAVAGLREAPVTDWPSLHQRFAKAGLFIASD
NGELKVKDGWDRKRPGVTLSAFGYSWSTDKLIRKLGEFTPPAQDIFTQVPDVGRYDPDTVTMLSRAGRMT
ETETLNEYAVSRLRAPLTALYQDPAQRTMQAVHTLLAHSGLYLKEQHDRLVICDGYDQTRTPVRAERVWP
ALTKAVMNSYEGGWQPVPHDIFRQVPPAERFAGGGLEARPVSDREWAKLRTGSGPQGALKREIFSDKESL
WRYALSHCRQDLEALISSGKFTWERGHELLARQGLLLMREKQGLVVMDAYNHDQTPVKASHVHPDLTLVR
AEPHAGAFVPVPSDIIERVAPVSRYNPDLAVSDRDIPGMKRDPELRRQRREARAAARDDLKARYSAWRAN
WQRPDLHNRERWQAIHDECRMRKARIRAQQRDPLVRKLHYHIAELQRMQALIALKESVKAERLELIGQGK
WYPPSYRQWVEVEALKGDRAAISQLRGWDYRDRRHDNTQSTSSQRCVVLCEPGNAPLYYNMPGLKPALQK
NGSIRFSDTDTGQHVCTDYGDRVVFRNGSDFASLQRELNRVSPVLFARDPKMDFAPEGNDIQFNQALAEM
VGWYNVYRAGEEDQVRISRPDVDRMREQCEAFFRNAEAEQTTPAYISHEPRNDWKPPSPR

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(51-317)


  Protein structure



No available structure.




Host bacterium

ID   10215 GenBank   NZ_CP068235
Plasmid name   YZ30|unnamed1 Incompatibility group   -
Plasmid size   76263 bp Coordinate of oriT [Strand]   7978..8062 [-]
Host baterium   Leclercia adecarboxylata strain YZ30

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   arsH, arsR, arsB, arsC, pcoE, pcoS, pcoR, pcoD, pcoC, pcoB, pcoA, silP, silA, silB, silF, silC, silR, silS, silE
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -