Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   109695
Name   oriT_p3_EfsC74_rep6 in_silico
Organism   Enterococcus faecalis strain EfsC74
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP124946 (1233..1282 [-], 50 nt)
oriT length   50 nt
IRs (inverted repeats)     _
Location of nic site      34..35
Conserved sequence flanking the
  nic site    		  GCTTGCAAAA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 50 nt

>oriT_p3_EfsC74_rep6
AATATCGCAACATGGTACCATGTTGCTCCGCTTGCAAAAAGAAAGCCTAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   6421 GenBank   WP_002360721
Name   mobV_QLQ50_RS00015_p3_EfsC74_rep6 insolico UniProt ID   A0A2H5CQ73
Length   586 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 586 a.a.        Molecular weight: 68087.93 Da        Isoelectric Point: 8.8137

>WP_002360721.1 MULTISPECIES: MobV family relaxase [Lactobacillales]
MRYTLLGSTAEIQRHRTTQEKKGGGALMSKIVARMEKMKDGNLSGIQRHNQRETNNHSNPDIDIEKSHLN
YDLVNPGSINYREKIKQIIESQRISKRAVRKDAVLVNEWIITSDTAFFQENTDTQAFFTDVVAYFSDRCG
RQNVAYATVHLDETTPHMHLGIVPMYEGRLSSKQVFSRQNLLEIQEELPTYLQERGYAIERGLRGSPQKH
LSVKEYKDVQKELQVSKQELANQEQILAEKERELHSYEQAIFRIDRLLEEKNEEVKGKVQAMNQLETKRN
EIINSLQTTVLPDLANVKEKKFSLNGLKYVLSASDFSAIKSITKDFETLRTQNKHLKIENNNLAQKNKEL
TQVNHEQELQITELAYELTLKKEQLTAFEEKQLNYDQSEQIKQELDTTTQTVSVLETENKRLKDKITDLT
YDFSELNEKYQEIKLKFDGLTTYLHERLGHAKETILFTIQQGVKYLQNAPKLKKSLERYSKDRTYLIDEK
GTLFLPPDTGSKGVTMSLNPHFYPLKAPFYNRETGCYEFVGEYMANGRSRTNTLQLSEEQVLEKKAFTFE
QSTDKKAWQQSKKYSRDMSKGRGLSR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(29-218)


  Protein structure


Source ID Structure
AlphaFold DB A0A2H5CQ73


Host bacterium

ID   10130 GenBank   NZ_CP124946
Plasmid name   p3_EfsC74_rep6 Incompatibility group   -
Plasmid size   5143 bp Coordinate of oriT [Strand]   1233..1282 [-]
Host baterium   Enterococcus faecalis strain EfsC74

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -