Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   109690
Name   oriT_K. variicola 0|P3 in_silico
Organism   Klebsiella variicola isolate 0
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_OW969915 (2409..2458 [-], 50 nt)
oriT length   50 nt
IRs (inverted repeats)      6..12, 15..21  (CAAAATT..AATTTTG)
Location of nic site      _
Conserved sequence flanking the
  nic site  
 
 _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 50 nt

>oriT_K. variicola 0|P3
ATCTTCAAAATTTTAATTTTGCGTGGGGTGTGGGTATTTTTAGTGGTGAG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Host bacterium


ID   10125 GenBank   NZ_OW969915
Plasmid name   K. variicola 0|P3 Incompatibility group   Col440I
Plasmid size   4805 bp Coordinate of oriT [Strand]   2409..2458 [-]
Host baterium   Klebsiella variicola isolate 0

Cargo genes


Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -