Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   109610
Name   oriT_pI11D in_silico
Organism   Lactococcus lactis subsp. lactis strain I.1.1
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP069227 (23858..23994 [+], 137 nt)
oriT length   137 nt
IRs (inverted repeats)      21..28, 42..49  (AAAAGGGG..CCCCTTTT)
 25..30, 39..44  (GGGGAA..TTCCCC)
Location of nic site      104..105
Conserved sequence flanking the
  nic site    		  GCTTGCAGTA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 137 nt

>oriT_pI11D
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTAATTTGTATTACAATGTGATAGCTTGCAGTATTTATGGTTTTATATGGTCTATTTTGTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   6389 GenBank   WP_153928014
Name   Relaxase_LLI11_RS13780_pI11D insolico UniProt ID   _
Length   410 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 410 a.a.        Molecular weight: 47777.41 Da        Isoelectric Point: 8.6771

>WP_153928014.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Lactococcus]
MATIAKISNGASAASALNYALGQDRPMHEKTEQWLQDHQLERPVELTNCRAVAVGGTNGIDPFIAKEQFD
VVRQLHNQTKESNQVLRITQSFALDELNPKVQKDWQKANDLGVELAENLYPNHQSAVYTHLDGKNHVLHN
HIIVNKVNLETGKKLREQKGESVQRAREMNDRLASRENWHILEPPKERQTETEKELIAKNEYSYMDDLRE
RINKSLQDLSVSSYETFKERLSDNGVILSERGQTFSYAFLDANNKQRRARETRLGSDFGRETILHELENR
ARQNEFRAVEQREPAITPLERDTQQRESEIVSLEQAIEPRKSEALKRESTINRFIDTIKQLAGRVPQLTQ
RVTRKLKQTKEKILDDFERRFSKDMKNYEQEQQQNLEKQANRDVQSEKKPKKDHDRGMSR

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(9-280)


  Protein structure



No available structure.




Host bacterium

ID   10045 GenBank   NZ_CP069227
Plasmid name   pI11D Incompatibility group   -
Plasmid size   27294 bp Coordinate of oriT [Strand]   23858..23994 [+]
Host baterium   Lactococcus lactis subsp. lactis strain I.1.1

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   cadX
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -